Orthogroup:group_78


Homologs in group_78

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20065 FBDBKF_20065 Morganella morganii S1 fimA type 1 fimbrial major subunit FimA
EHELCC_03465 EHELCC_03465 Morganella morganii S2 fimA type 1 fimbrial major subunit FimA
NLDBIP_03465 NLDBIP_03465 Morganella morganii S4 fimA type 1 fimbrial major subunit FimA
LHKJJB_09295 LHKJJB_09295 Morganella morganii S3 fimA type 1 fimbrial major subunit FimA
HKOGLL_09680 HKOGLL_09680 Morganella morganii S5 fimA type 1 fimbrial major subunit FimA
F4V73_RS01035 F4V73_RS01035 Morganella psychrotolerans - fimbrial protein
F4V73_RS01685 F4V73_RS01685 Morganella psychrotolerans fimA type 1 fimbrial major subunit FimA
PMI_RS10910 PMI_RS10910 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS13445 PMI_RS13445 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS13460 PMI_RS13460 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS16670 PMI_RS16670 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS17120 PMI_RS17120 Proteus mirabilis HI4320 fimA type 1 fimbrial major subunit FimA
PMI_RS17135 PMI_RS17135 Proteus mirabilis HI4320 - fimbrial protein

Distribution of group_78 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_78 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_78

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_78.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fimA 7
2 - 6

Product

# Product Occurence
1 type 1 fimbrial major subunit FimA 7
2 fimbrial protein 6

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3539 13 N Cell motility (N) Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07345 11 major type 1 subunit fimbrin (pilin) Shigellosis
Pertussis		 -
K07348 2 minor fimbrial subunit - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00419 13 Fimbrial protein

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG012278 1 Type-1 fimbrial protein, A chain precursor VF0221 Adherence
VFG042679 5 major fimbrial subunit VF1211 Adherence

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
F17 fimbrial protein 1
F7-2 fimbrial protein 2
Fimbria A protein 1
Fimbrial adapter PapK 2
Fimbrial protein 987P 1
Fimbrial protein FimX 1
Fimbrial subunit ElfA 1
Fimbrial subunit type 1 3
Fimbrial-like protein FimF 1
Fimbrin-like protein FimI 2
KS71A fimbrillin 1
Laminin-binding fimbrial subunit ElfA 1
Long polar fimbria protein A 1
Major MR/P fimbria protein 1
Major fimbrial subunit 6
Major fimbrial subunit SMF-1 1
Minor fimbrial subunit HifD 2
PAP fimbrial minor pilin protein 1
PRS fimbrial major pilin protein (Fragment) 1
PRS fimbrial minor pilin protein 1
Pap fimbrial major pilin protein 1
Probable fimbrial subunit LpfE 1
Probable major fimbrial subunit LpfA 1
Protein FimF 1
Protein FimG 1
Protein LpfE 1
Protein PrsK 1
Putative fimbrin-like protein FimI 1
Putative minor fimbrial subunit PmfF 1
S-fimbrial protein subunit SfaA 1
S-fimbrial protein subunit SfaG 1
Serotype 2 fimbrial subunit 1
Serotype 3 fimbrial subunit 1
Type-1 fimbrial protein subunit 1
Type-1 fimbrial protein, A chain 4
Type-1 fimbrial protein, C chain 2
Uncharacterized fimbrial-like protein SfmA 2
Uncharacterized fimbrial-like protein SfmF 1
Uncharacterized fimbrial-like protein YbgD 1
Uncharacterized fimbrial-like protein YcbU 1
Uncharacterized fimbrial-like protein YcbV 1
Uncharacterized fimbrial-like protein YdeR 1
Uncharacterized fimbrial-like protein YdeS 1
Uncharacterized fimbrial-like protein YehD 1
Uncharacterized fimbrial-like protein YfcP 1
Uncharacterized fimbrial-like protein YfcV 1
Uncharacterized fimbrial-like protein YgiL 1
Uncharacterized fimbrial-like protein YraH 1

Protein length

Min length 172
Max length 188
Mean length (sd) 180.2 (4.7)
Median length 181.0

Protein length distribution