Homologs in group_78

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01590 FBDBKF_01590 59.5 Morganella morganii S1 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
FBDBKF_06415 FBDBKF_06415 100.0 Morganella morganii S1 smc Chromosome segregation ATPase Smc
EHELCC_02060 EHELCC_02060 59.5 Morganella morganii S2 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
NLDBIP_01400 NLDBIP_01400 59.5 Morganella morganii S4 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
NLDBIP_09840 NLDBIP_09840 100.0 Morganella morganii S4 smc Chromosome segregation ATPase Smc
LHKJJB_00635 LHKJJB_00635 59.5 Morganella morganii S3 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
LHKJJB_07915 LHKJJB_07915 100.0 Morganella morganii S3 smc Chromosome segregation ATPase Smc
HKOGLL_00675 HKOGLL_00675 59.5 Morganella morganii S5 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
HKOGLL_07465 HKOGLL_07465 100.0 Morganella morganii S5 smc Chromosome segregation ATPase Smc
F4V73_RS19530 F4V73_RS19530 51.3 Morganella psychrotolerans - YadA C-terminal domain-containing protein
PMI_RS10715 PMI_RS10715 22.3 Proteus mirabilis HI4320 - YadA-like family protein

Distribution of the homologs in the orthogroup group_78

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_78

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31489 2.87e-34 135 63 0 90 1 yadA Adhesin YadA Yersinia enterocolitica
A1JUB7 4.51e-34 134 63 0 88 1 yadA Adhesin YadA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P0C2W0 2.9e-33 132 62 0 88 1 yadA Adhesin YadA Yersinia enterocolitica
P10858 2.52e-32 130 63 0 85 1 yadA Adhesin YadA Yersinia pseudotuberculosis serotype I (strain IP32953)
A0ELI2 5.07e-23 102 41 7 156 1 nadA Neisseria adhesin A Neisseria meningitidis serogroup B
Q9JXK7 5.85e-23 102 48 1 104 1 nadA Neisseria adhesin A Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P0DV44 9.16e-21 97 47 6 121 1 nadA Neisseria adhesin A Neisseria meningitidis serogroup B
Q9LA60 1.22e-20 96 43 1 113 1 eibA Immunoglobulin-binding protein EibA Escherichia coli
Q9MCI8 1.36e-20 97 44 1 113 1 eibD Immunoglobulin-binding protein EibD Escherichia coli
Q9LA56 1.95e-20 96 44 1 113 1 eibC Immunoglobulin-binding protein EibC Escherichia coli
Q9LA53 6.53e-20 95 47 2 117 1 eibE Immunoglobulin-binding protein EibE Escherichia coli
P24043 2.13e-08 60 21 7 271 1 LAMA2 Laminin subunit alpha-2 Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_09460
Feature type CDS
Gene smc
Product Chromosome segregation ATPase Smc
Location 118741 - 120015 (strand: -1)
Length 1275 (nucleotides) / 424 (amino acids)
In genomic island -

Contig

Accession ZDB_218
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_78
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF03895 YadA-like membrane anchor domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5295 Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 UW Autotransporter adhesin

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21449 trimeric autotransporter adhesin - -

Protein Sequence

MKKNLISLLIMLPFSYANADDNSNYYYARTLVDLSEYKKVTEDEIPVLVPETSTKLYFVENNYQPLITSEIKNEYDRSAGISEVIQTYNYLNDKINHTLNSVTEIQSNSPVYNQSLSQTIDEFNSDMKNIQDANEKQDTKLEKLGAAALSAEVKINEINETISPVFNEISQLKQDADSIKIQSESVILSVGELHTDISAVQTVNKEQDDQLEELHSQNKNIRNNINSLIERAIPADNAIYQLKQDSKKNEQEINNLESAIELTDEVNFSQGNEIQQQGKMISELKADSDKLTTDLKDVRKKSNTTTNVANANRRDIDKHATKIDKNTLDILKNRQDLRSLENDLRETNERLDNGLAASAALNGLFQPYGVGKLNITAAMGGYQSTQAVAVGTGYRFNENIAVKTGVAYTGSNDVMYNMAFNLEW

Flanking regions ( +/- flanking 50bp)

TGCAGGTATATTTTTTCAAATCCTGTTTTATCTATACTGAGAGTTAATGAATGAAAAAAAATTTAATTTCCCTGCTTATCATGCTGCCTTTTTCATATGCGAACGCTGATGATAACAGCAACTACTATTATGCAAGAACACTTGTTGATTTATCTGAATATAAAAAAGTTACTGAAGACGAGATTCCGGTATTAGTACCGGAAACCAGTACTAAATTATATTTTGTAGAAAATAATTATCAGCCATTGATTACATCTGAAATTAAAAATGAGTATGACCGCAGTGCGGGTATTTCAGAAGTTATTCAAACATATAATTACTTAAATGACAAAATTAATCATACACTGAACAGTGTTACGGAGATACAGAGTAATTCCCCTGTTTATAATCAGTCATTATCTCAAACTATTGATGAATTTAATAGTGACATGAAAAATATACAGGATGCTAATGAAAAACAGGATACTAAGCTGGAGAAACTGGGGGCGGCAGCCCTGTCTGCTGAAGTTAAAATTAATGAGATAAATGAGACAATATCACCGGTATTCAATGAGATATCTCAGTTAAAACAGGATGCAGACAGTATCAAAATACAGAGTGAATCTGTCATTTTATCTGTGGGTGAACTGCATACGGATATCTCAGCCGTTCAGACTGTGAATAAAGAACAGGATGATCAACTCGAAGAACTTCATTCGCAAAATAAAAACATAAGAAATAATATCAATTCTCTGATTGAACGAGCGATCCCTGCCGATAATGCAATTTATCAGTTAAAACAAGATAGTAAGAAGAATGAGCAGGAAATTAATAATCTGGAATCAGCTATCGAACTGACAGATGAAGTGAATTTTTCACAGGGTAACGAAATTCAGCAACAGGGAAAAATGATCTCTGAACTGAAAGCCGATTCAGACAAGCTGACAACAGATTTAAAAGATGTTCGCAAAAAGAGTAATACGACAACCAATGTGGCTAATGCTAACAGAAGAGATATTGATAAACATGCGACCAAAATTGATAAAAATACCCTCGATATCCTGAAGAACCGCCAGGATCTGCGTTCACTGGAAAATGATTTACGTGAAACCAACGAGCGCCTTGATAACGGTCTGGCGGCCAGTGCCGCACTGAACGGTCTGTTCCAGCCGTACGGTGTCGGTAAACTGAATATCACTGCGGCGATGGGCGGATACCAGTCCACTCAGGCAGTCGCAGTGGGAACCGGTTACCGGTTCAACGAGAACATCGCTGTGAAGACTGGTGTTGCATACACCGGTTCGAACGATGTGATGTACAACATGGCTTTTAACCTTGAATGGTAATGCTGTGTTATGGTGACTGAAAGGTCATGTTTCATATACTCCTCCTTTCA