COG4591


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4591, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type transport system involved in lipoprotein release, permease component LolC
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4591 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1948 FBDBKF_14620 20329 21576 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S1
1 group_382 FBDBKF_14630 22261 23463 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S1
2 group_1948 EHELCC_15425 50405 51652 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S2
3 group_382 EHELCC_15435 52337 53539 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S2
4 group_1948 NLDBIP_15955 50405 51652 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S4
5 group_382 NLDBIP_15965 52337 53539 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S4
6 group_382 LHKJJB_15875 63147 64349 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S3
7 group_1948 LHKJJB_15885 65034 66281 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S3
8 group_382 HKOGLL_14995 62359 63561 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella morganii S5
9 group_1948 HKOGLL_15005 64246 65493 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella morganii S5
10 group_382 F4V73_RS05110 1089481 1090866 -1 FtsX-like permease family protein Morganella psychrotolerans
11 group_1948 F4V73_RS07415 1548574 1549821 -1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Morganella psychrotolerans
12 group_382 F4V73_RS07425 1550506 1551708 -1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Morganella psychrotolerans
13 group_382 PMI_RS04310 968901 970103 1 lolC lipoprotein-releasing ABC transporter permease subunit LolC Proteus mirabilis HI4320
14 group_1948 PMI_RS04320 970800 972047 1 lolE lipoprotein-releasing ABC transporter permease subunit LolE Proteus mirabilis HI4320
15 group_4647 PMI_RS14350 3183468 3184775 -1 hypothetical protein Proteus mirabilis HI4320