COG1974


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1974, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 33 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)
Function(s) descr. Transcription (K)
Signal transduction mechanisms (T)

Occurence in the database

COG1974 is associated with 33 different proteins (see tab "Protein list" and "Profile")
The 33 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3390 FBDBKF_13205 29631 30407 1 Helix-turn-helix domain-containing protein Morganella morganii S1
1 group_2996 FBDBKF_17335 43500 43916 -1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S1
2 group_3068 FBDBKF_18735 26028 26660 1 lexA LexA family transcriptional regulator Morganella morganii S1
3 group_2423 FBDBKF_19550 17600 18214 1 lexA transcriptional repressor LexA Morganella morganii S1
4 group_2437 FBDBKF_19920 5309 6016 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S1
5 group_2996 EHELCC_01555 311585 312001 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S2
6 group_2437 EHELCC_07695 9406 10113 -1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S2
7 group_3390 EHELCC_08890 244784 245560 -1 Helix-turn-helix domain-containing protein Morganella morganii S2
8 group_3068 EHELCC_15310 26028 26660 1 lexA LexA family transcriptional regulator Morganella morganii S2
9 group_2423 EHELCC_16495 17600 18214 1 lexA transcriptional repressor LexA Morganella morganii S2
10 group_2996 NLDBIP_01905 368135 368551 -1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S4
11 group_2437 NLDBIP_08020 9406 10113 -1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S4
12 group_3390 NLDBIP_09215 244784 245560 -1 Helix-turn-helix domain-containing protein Morganella morganii S4
13 group_3068 NLDBIP_15840 26028 26660 1 lexA LexA family transcriptional regulator Morganella morganii S4
14 group_2423 NLDBIP_16705 17600 18214 1 lexA transcriptional repressor LexA Morganella morganii S4
15 group_2996 LHKJJB_00130 24134 24550 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S3
16 group_3390 LHKJJB_05050 11599 12375 1 Helix-turn-helix domain-containing protein Morganella morganii S3
17 group_2437 LHKJJB_06245 247046 247753 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S3
18 group_3068 LHKJJB_16000 90026 90658 -1 lexA LexA family transcriptional regulator Morganella morganii S3
19 group_2423 LHKJJB_16765 50296 50910 -1 lexA transcriptional repressor LexA Morganella morganii S3
20 group_2996 HKOGLL_00170 29645 30061 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S5
21 group_3390 HKOGLL_05865 229375 230151 -1 Helix-turn-helix domain-containing protein Morganella morganii S5
22 group_3068 HKOGLL_15120 89238 89870 -1 lexA LexA family transcriptional regulator Morganella morganii S5
23 group_2423 HKOGLL_18850 17600 18214 1 lexA transcriptional repressor LexA Morganella morganii S5
24 group_2437 HKOGLL_19100 5315 6022 1 lexA SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) Morganella morganii S5
25 group_2437 F4V73_RS02025 437960 438631 -1 S24 family peptidase Morganella psychrotolerans
26 group_2437 F4V73_RS06245 1306862 1307542 1 S24 family peptidase Morganella psychrotolerans
27 group_2423 F4V73_RS18575 54104 54718 -1 lexA transcriptional repressor LexA Morganella psychrotolerans
28 group_125 PMI_RS02395 538355 539122 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
29 group_4398 PMI_RS04665 1030945 1031592 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
30 group_3068 PMI_RS11985 2651345 2651992 -1 LexA family transcriptional regulator Proteus mirabilis HI4320
31 group_2996 PMI_RS12280 2724786 2725235 1 umuD translesion error-prone DNA polymerase V autoproteolytic subunit Proteus mirabilis HI4320
32 group_2423 PMI_RS13550 3005857 3006468 -1 lexA transcriptional repressor LexA Proteus mirabilis HI4320