COG1974
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1974, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 33 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) |
---|---|
Function(s) descr. | Transcription (K) Signal transduction mechanisms (T) |
Occurence in the database
COG1974 is associated with 33 different proteins (see tab "Protein list" and "Profile") |
The 33 proteins are classified into 7 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_3390 | FBDBKF_13205 | 29631 | 30407 | 1 | Helix-turn-helix domain-containing protein | Morganella morganii S1 | |
1 | group_2996 | FBDBKF_17335 | 43500 | 43916 | -1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S1 |
2 | group_3068 | FBDBKF_18735 | 26028 | 26660 | 1 | lexA | LexA family transcriptional regulator | Morganella morganii S1 |
3 | group_2423 | FBDBKF_19550 | 17600 | 18214 | 1 | lexA | transcriptional repressor LexA | Morganella morganii S1 |
4 | group_2437 | FBDBKF_19920 | 5309 | 6016 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S1 |
5 | group_2996 | EHELCC_01555 | 311585 | 312001 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S2 |
6 | group_2437 | EHELCC_07695 | 9406 | 10113 | -1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S2 |
7 | group_3390 | EHELCC_08890 | 244784 | 245560 | -1 | Helix-turn-helix domain-containing protein | Morganella morganii S2 | |
8 | group_3068 | EHELCC_15310 | 26028 | 26660 | 1 | lexA | LexA family transcriptional regulator | Morganella morganii S2 |
9 | group_2423 | EHELCC_16495 | 17600 | 18214 | 1 | lexA | transcriptional repressor LexA | Morganella morganii S2 |
10 | group_2996 | NLDBIP_01905 | 368135 | 368551 | -1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S4 |
11 | group_2437 | NLDBIP_08020 | 9406 | 10113 | -1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S4 |
12 | group_3390 | NLDBIP_09215 | 244784 | 245560 | -1 | Helix-turn-helix domain-containing protein | Morganella morganii S4 | |
13 | group_3068 | NLDBIP_15840 | 26028 | 26660 | 1 | lexA | LexA family transcriptional regulator | Morganella morganii S4 |
14 | group_2423 | NLDBIP_16705 | 17600 | 18214 | 1 | lexA | transcriptional repressor LexA | Morganella morganii S4 |
15 | group_2996 | LHKJJB_00130 | 24134 | 24550 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S3 |
16 | group_3390 | LHKJJB_05050 | 11599 | 12375 | 1 | Helix-turn-helix domain-containing protein | Morganella morganii S3 | |
17 | group_2437 | LHKJJB_06245 | 247046 | 247753 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S3 |
18 | group_3068 | LHKJJB_16000 | 90026 | 90658 | -1 | lexA | LexA family transcriptional regulator | Morganella morganii S3 |
19 | group_2423 | LHKJJB_16765 | 50296 | 50910 | -1 | lexA | transcriptional repressor LexA | Morganella morganii S3 |
20 | group_2996 | HKOGLL_00170 | 29645 | 30061 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S5 |
21 | group_3390 | HKOGLL_05865 | 229375 | 230151 | -1 | Helix-turn-helix domain-containing protein | Morganella morganii S5 | |
22 | group_3068 | HKOGLL_15120 | 89238 | 89870 | -1 | lexA | LexA family transcriptional regulator | Morganella morganii S5 |
23 | group_2423 | HKOGLL_18850 | 17600 | 18214 | 1 | lexA | transcriptional repressor LexA | Morganella morganii S5 |
24 | group_2437 | HKOGLL_19100 | 5315 | 6022 | 1 | lexA | SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) | Morganella morganii S5 |
25 | group_2437 | F4V73_RS02025 | 437960 | 438631 | -1 | S24 family peptidase | Morganella psychrotolerans | |
26 | group_2437 | F4V73_RS06245 | 1306862 | 1307542 | 1 | S24 family peptidase | Morganella psychrotolerans | |
27 | group_2423 | F4V73_RS18575 | 54104 | 54718 | -1 | lexA | transcriptional repressor LexA | Morganella psychrotolerans |
28 | group_125 | PMI_RS02395 | 538355 | 539122 | 1 | helix-turn-helix domain-containing protein | Proteus mirabilis HI4320 | |
29 | group_4398 | PMI_RS04665 | 1030945 | 1031592 | -1 | helix-turn-helix domain-containing protein | Proteus mirabilis HI4320 | |
30 | group_3068 | PMI_RS11985 | 2651345 | 2651992 | -1 | LexA family transcriptional regulator | Proteus mirabilis HI4320 | |
31 | group_2996 | PMI_RS12280 | 2724786 | 2725235 | 1 | umuD | translesion error-prone DNA polymerase V autoproteolytic subunit | Proteus mirabilis HI4320 |
32 | group_2423 | PMI_RS13550 | 3005857 | 3006468 | -1 | lexA | transcriptional repressor LexA | Proteus mirabilis HI4320 |