COG0776


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0776, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Bacterial nucleoid DNA-binding protein IHF-alpha
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0776 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1230 FBDBKF_07165 105962 106246 1 ihfB integration host factor subunit beta Morganella morganii S1
1 group_1805 FBDBKF_13395 57196 57492 -1 ihfA integration host factor subunit alpha Morganella morganii S1
2 group_2114 FBDBKF_15890 29432 29716 1 hupB nucleoid-associated protein HU-beta Morganella morganii S1
3 group_2303 FBDBKF_17695 34908 35180 1 hupA nucleoid-associated protein HU-alpha Morganella morganii S1
4 group_1230 EHELCC_03805 79940 80224 -1 ihfB integration host factor subunit beta Morganella morganii S2
5 group_1805 EHELCC_08700 217699 217995 1 ihfA integration host factor subunit alpha Morganella morganii S2
6 group_2303 EHELCC_18180 34284 34556 1 hupA nucleoid-associated protein HU-alpha Morganella morganii S2
7 group_2114 EHELCC_18490 16871 17155 1 hupB nucleoid-associated protein HU-beta Morganella morganii S2
8 group_1230 NLDBIP_03805 79736 80020 -1 ihfB integration host factor subunit beta Morganella morganii S4
9 group_1805 NLDBIP_09025 217699 217995 1 ihfA integration host factor subunit alpha Morganella morganii S4
10 group_2114 NLDBIP_17325 16871 17155 1 hupB nucleoid-associated protein HU-beta Morganella morganii S4
11 group_2303 NLDBIP_17970 4181 4453 -1 hupA nucleoid-associated protein HU-alpha Morganella morganii S4
12 group_1805 LHKJJB_05240 39164 39460 -1 ihfA integration host factor subunit alpha Morganella morganii S3
13 group_1230 LHKJJB_09635 79850 80134 -1 ihfB integration host factor subunit beta Morganella morganii S3
14 group_2114 LHKJJB_17335 39033 39317 -1 hupB nucleoid-associated protein HU-beta Morganella morganii S3
15 group_2303 LHKJJB_18165 4181 4453 -1 hupA nucleoid-associated protein HU-alpha Morganella morganii S3
16 group_1805 HKOGLL_05675 202290 202586 1 ihfA integration host factor subunit alpha Morganella morganii S5
17 group_1230 HKOGLL_09340 110918 111202 1 ihfB integration host factor subunit beta Morganella morganii S5
18 group_2114 HKOGLL_17060 16871 17155 1 hupB nucleoid-associated protein HU-beta Morganella morganii S5
19 group_2303 HKOGLL_18035 34284 34556 1 hupA nucleoid-associated protein HU-alpha Morganella morganii S5
20 group_1230 F4V73_RS01350 293983 294267 1 ihfB integration host factor subunit beta Morganella psychrotolerans
21 group_1805 F4V73_RS03365 718319 718615 1 ihfA integration host factor subunit alpha Morganella psychrotolerans
22 group_2303 F4V73_RS15075 253598 253870 1 hupA nucleoid-associated protein HU-alpha Morganella psychrotolerans
23 group_2114 F4V73_RS16425 101914 102189 -1 hupB nucleoid-associated protein HU-beta Morganella psychrotolerans
24 group_2114 PMI_RS00570 147876 148151 1 hupB nucleoid-associated protein HU-beta Proteus mirabilis HI4320
25 group_1230 PMI_RS03520 785456 785743 1 ihfB integration host factor subunit beta Proteus mirabilis HI4320
26 group_1805 PMI_RS05055 1105154 1105450 1 ihfA integration host factor subunit alpha Proteus mirabilis HI4320
27 group_2303 PMI_RS13685 3041856 3042128 -1 HU family DNA-binding protein Proteus mirabilis HI4320