COG0668


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0668, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Small-conductance mechanosensitive channel
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG0668 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_835 FBDBKF_04210 26406 27266 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
1 group_1278 FBDBKF_07720 61891 63102 1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
2 group_1454 FBDBKF_09255 82555 83595 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
3 group_2244 FBDBKF_17170 17521 18804 1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
4 group_2244 EHELCC_01720 336697 337980 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
5 group_835 EHELCC_05500 85863 86723 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
6 group_1454 EHELCC_10155 62509 63549 1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
7 group_1278 EHELCC_13550 36085 37296 1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
8 group_2244 NLDBIP_01740 342156 343439 1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
9 group_835 NLDBIP_05820 126928 127788 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
10 group_1454 NLDBIP_10500 40780 41820 1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
11 group_1278 NLDBIP_13995 56960 58171 1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
12 group_2244 LHKJJB_00295 49246 50529 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
13 group_835 LHKJJB_02700 104452 105312 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
14 group_1278 LHKJJB_08855 101578 102789 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
15 group_1454 LHKJJB_10855 149708 150748 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
16 group_2244 HKOGLL_00335 54757 56040 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
17 group_835 HKOGLL_06175 26316 27176 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
18 group_1278 HKOGLL_08405 101578 102789 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
19 group_1454 HKOGLL_13915 83009 84049 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
20 group_2244 F4V73_RS05925 1261571 1262863 1 mechanosensitive ion channel Morganella psychrotolerans
21 group_835 F4V73_RS08655 1786207 1787067 -1 mscS small-conductance mechanosensitive channel MscS Morganella psychrotolerans
22 group_1454 F4V73_RS10715 272515 273561 1 mechanosensitive ion channel family protein Morganella psychrotolerans
23 group_1278 F4V73_RS13365 303399 304604 -1 mechanosensitive ion channel Morganella psychrotolerans
24 group_1278 PMI_RS07660 1670550 1671755 -1 mechanosensitive ion channel Proteus mirabilis HI4320
25 group_2244 PMI_RS08340 1821177 1822433 1 mechanosensitive ion channel family protein Proteus mirabilis HI4320
26 group_835 PMI_RS10050 2179738 2180598 -1 mscS small-conductance mechanosensitive channel MscS Proteus mirabilis HI4320
27 group_1454 PMI_RS10665 2344705 2345730 1 mechanosensitive ion channel family protein Proteus mirabilis HI4320