Homologs in group_2244

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17170 FBDBKF_17170 63.8 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
EHELCC_01720 EHELCC_01720 63.8 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_01740 NLDBIP_01740 63.8 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_00295 LHKJJB_00295 63.8 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_00335 HKOGLL_00335 63.8 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
F4V73_RS05925 F4V73_RS05925 64.0 Morganella psychrotolerans - mechanosensitive ion channel

Distribution of the homologs in the orthogroup group_2244

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2244

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT5 2.33e-177 504 59 2 396 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 2.33e-177 504 59 2 396 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
P0AEB5 5.64e-12 70 26 7 250 1 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli (strain K12)
P0AEB6 5.64e-12 70 26 7 250 3 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli O157:H7
Q9ZKG7 1.58e-09 63 24 8 248 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
O25170 3.95e-09 62 24 8 248 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)
O07594 2.71e-06 52 24 6 230 3 yhdY Uncharacterized MscS family protein YhdY Bacillus subtilis (strain 168)
Q57634 4.39e-06 52 23 8 196 1 MJ0170 Small-conductance mechanosensitive channel MscMJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O66994 0.00032 46 22 2 120 3 aq_812 Uncharacterized MscS family protein aq_812 Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS08340
Feature type CDS
Gene -
Product mechanosensitive ion channel family protein
Location 1821177 - 1822433 (strand: 1)
Length 1257 (nucleotides) / 418 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2244
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain
PF21082 Mechanosensitive ion channel MscS, C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16053 miniconductance mechanosensitive channel - -

Protein Sequence

MQQQLLTWIRQFNEEYAQITSLLLVLLIIFVVALVLHFILHKLVLPKLSKAISKYDQKWQLSFEINKLFSRFAFLIQGVVINIQALLWMGPGKTQEILTTTAQAWCLLFGLLMIFSIMDLCLQIMRNSPSFGRLPLRGIFQSLKLVASVLIGIMIVSLLIGKSPLILLSGLGAMTAVLMLVFKDPIMGLVAGIQLSANNMISLGDWLEMPKYGADGAVVDISLTTVKVRNWDNTVTTIPTYSLISDSFKNWQAMTQSGGRRIKRSLSLDINSIYFLDQENIDKLEKAQLLEPYIKSKVGEISSYNASLCHEHQMPLNQRGMTNVGTFRAYVEAYLKNHPKIHKQMTIMVRQLAPTSEGLPIEIYAFTNTTVWVEYEAIQSDIFDHIFAILPQFGLRIHQSPTGSDVRALKFPTNIDTP

Flanking regions ( +/- flanking 50bp)

CCTCTTCTTGTACCCTAGTATTAAATCACCTTTTATGATGAGGATAGTTTATGCAGCAGCAACTGCTTACATGGATACGTCAGTTTAATGAAGAGTACGCTCAAATCACTTCTCTGTTACTTGTTTTATTGATCATTTTTGTTGTTGCTCTTGTTCTCCACTTTATTTTGCACAAACTTGTGCTCCCTAAGCTTTCAAAAGCTATCAGTAAATACGATCAAAAGTGGCAACTCTCTTTTGAAATTAATAAGTTATTCAGTCGATTTGCCTTTCTTATCCAAGGTGTAGTCATTAATATCCAAGCCTTATTATGGATGGGACCCGGTAAGACACAGGAGATATTAACCACTACAGCTCAAGCATGGTGTTTACTTTTCGGTTTATTGATGATTTTCTCAATTATGGATCTCTGTTTGCAGATCATGAGAAATTCCCCTTCTTTTGGCCGATTACCCCTTAGAGGTATTTTCCAAAGTTTAAAATTAGTCGCCAGCGTGCTGATTGGTATCATGATTGTTTCATTACTGATCGGTAAATCACCGCTTATTTTATTAAGTGGTTTAGGTGCCATGACTGCGGTGTTGATGTTGGTATTTAAAGATCCAATTATGGGACTTGTTGCCGGTATTCAACTCTCCGCCAATAATATGATTAGCTTGGGTGATTGGTTAGAAATGCCTAAATATGGTGCTGATGGTGCCGTAGTGGATATTAGCCTCACCACAGTAAAAGTACGTAATTGGGATAATACCGTTACGACCATTCCTACTTATTCTTTAATTTCTGATTCGTTTAAAAACTGGCAAGCGATGACACAATCAGGTGGGCGTCGAATTAAGCGCAGTTTATCTCTTGATATCAATAGTATTTACTTTTTAGATCAAGAGAATATTGATAAATTAGAAAAGGCACAGCTTCTTGAACCTTATATAAAAAGCAAAGTAGGTGAAATCTCCAGCTATAACGCTAGCCTTTGTCATGAGCATCAAATGCCACTTAATCAACGTGGTATGACGAATGTCGGTACATTTCGCGCTTACGTGGAAGCTTATCTAAAAAATCATCCGAAGATCCATAAACAGATGACCATTATGGTAAGACAGCTTGCCCCAACCTCTGAAGGGTTACCTATCGAAATTTATGCCTTTACCAATACAACCGTGTGGGTAGAGTATGAAGCTATTCAGTCCGATATTTTTGATCATATATTCGCTATTCTTCCTCAGTTTGGTTTACGAATACACCAATCACCAACAGGTAGCGATGTTAGAGCATTAAAATTCCCTACCAATATCGACACACCATAGCCCTAGCGTTCATTATTTAAAAGGGAGATTAATTCTCCCTTTTTTCTATT