Homologs in group_2244

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_01720 EHELCC_01720 100.0 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_01740 NLDBIP_01740 100.0 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_00295 LHKJJB_00295 100.0 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_00335 HKOGLL_00335 100.0 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
F4V73_RS05925 F4V73_RS05925 88.3 Morganella psychrotolerans - mechanosensitive ion channel
PMI_RS08340 PMI_RS08340 63.8 Proteus mirabilis HI4320 - mechanosensitive ion channel family protein

Distribution of the homologs in the orthogroup group_2244

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2244

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT5 7.85e-171 488 59 1 388 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 7.85e-171 488 59 1 388 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
O25170 3.13e-07 56 20 7 255 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKG7 9.76e-07 54 20 7 255 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
P0AEB5 3.83e-05 49 21 5 235 1 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli (strain K12)
P0AEB6 3.83e-05 49 21 5 235 3 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli O157:H7
Q57634 0.000117 47 27 2 86 1 MJ0170 Small-conductance mechanosensitive channel MscMJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17170
Feature type CDS
Gene mscS
Product Small-conductance mechanosensitive channel
Location 17521 - 18804 (strand: 1)
Length 1284 (nucleotides) / 427 (amino acids)

Contig

Accession contig_27
Length 46634 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2244
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16053 miniconductance mechanosensitive channel - -

Protein Sequence

MEQQLRLWLQQQFELSNDYASWAAITGVIVLILAIAVILHLTLHKGLLPYIERRTGGAQRPWGALITRTRLFNRFAFLIQGIVFNIQALIWLGRGSAAQEILTTGAQAWCLLFGMLLLFSVMDILQNLSRHTPSLSRLPLRGVMQSLKLIIAVLFSILIISLLIGKSPLILLSGLGAMTAVLMLVFKDPIMGLVAGIQLSVNDMLNVGDWLEMPKYGADGAVTDIGLTTVKVQNWDNTITTIPTYALISDSFKNWQGMTASGGRRIKRSMNLDTTSIRFLTDEEISRLRQSNLIAGYIDAKLQEIAEYNAQEPGDTLLNQRRLTNIGTFRAYAEAYIKASPHIHKKMTTMVRQLAPTPDGLPVEIYAFTNVTAWISYEQIQSDIFDHLFAILPQFWLRVHQTPTGFDMRGIAAHFARECESERRAGL

Flanking regions ( +/- flanking 50bp)

TGCTGCTCACTAAGGAGTCTGTAAAAACCACGTCACAGGAGACATTTTTTATGGAGCAACAACTGCGGTTATGGCTGCAACAACAATTTGAACTCAGTAATGACTACGCCTCATGGGCGGCCATTACCGGGGTTATTGTCCTTATTCTGGCTATCGCTGTTATTCTGCATCTTACCCTGCACAAAGGCCTTCTGCCGTATATTGAACGTCGCACCGGTGGCGCTCAGCGCCCGTGGGGGGCACTAATTACCCGCACCCGGCTGTTTAACCGGTTTGCCTTTCTGATTCAGGGGATAGTGTTTAATATCCAGGCACTGATCTGGCTGGGACGCGGGTCTGCCGCACAGGAGATCCTCACGACCGGCGCACAGGCATGGTGCCTGTTGTTCGGCATGTTGCTGCTGTTTTCCGTGATGGACATTCTTCAGAACCTCTCCCGTCATACGCCGTCCCTGAGCCGTCTTCCGCTGCGCGGCGTGATGCAGAGCCTGAAACTGATTATCGCGGTGCTCTTCAGTATCCTGATTATTTCGCTGCTGATAGGAAAATCCCCGCTGATTTTACTGAGCGGACTCGGTGCCATGACCGCGGTGCTGATGCTGGTCTTTAAAGACCCGATCATGGGACTGGTAGCCGGTATTCAGTTATCGGTCAATGATATGCTTAATGTCGGGGACTGGCTGGAGATGCCGAAATACGGCGCGGACGGTGCTGTGACGGATATCGGGCTGACGACGGTCAAAGTGCAGAACTGGGATAATACCATTACCACCATCCCGACTTACGCCCTGATTTCCGATTCCTTCAAAAACTGGCAGGGAATGACGGCATCCGGCGGACGGCGCATCAAACGCAGCATGAACCTGGATACCACCAGCATCCGTTTTCTGACTGATGAAGAGATCAGCCGGCTGCGGCAATCAAACCTGATAGCCGGGTATATCGATGCCAAATTACAGGAAATCGCAGAATACAATGCGCAGGAACCCGGAGATACCCTGCTCAACCAGCGGCGGCTGACCAATATCGGGACATTCCGTGCGTATGCGGAGGCGTACATCAAAGCCAGTCCGCATATTCACAAGAAGATGACGACCATGGTGCGCCAGCTGGCACCGACACCGGACGGGCTGCCGGTGGAAATCTACGCCTTCACCAATGTGACAGCATGGATAAGCTATGAGCAAATCCAGTCCGATATTTTTGATCACCTGTTCGCGATCCTGCCGCAATTCTGGCTGCGGGTGCATCAGACACCAACGGGCTTTGATATGCGCGGTATTGCCGCGCATTTCGCCCGTGAATGTGAATCAGAACGCCGAGCCGGGCTGTAACAGAAACTCCGCCTCTTCCGGGGTGGAGTTCCGCCCCAGAATCTCATTGC