Homologs in group_2244

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17170 FBDBKF_17170 88.3 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
EHELCC_01720 EHELCC_01720 88.3 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_01740 NLDBIP_01740 88.3 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_00295 LHKJJB_00295 88.3 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_00335 HKOGLL_00335 88.3 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
PMI_RS08340 PMI_RS08340 64.0 Proteus mirabilis HI4320 - mechanosensitive ion channel family protein

Distribution of the homologs in the orthogroup group_2244

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2244

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT5 1.38e-172 492 59 2 390 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 1.38e-172 492 59 2 390 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
O25170 2.05e-08 60 21 10 281 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKG7 6.07e-08 58 21 10 281 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
P0AEB5 1.37e-06 53 22 5 237 1 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli (strain K12)
P0AEB6 1.37e-06 53 22 5 237 3 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli O157:H7
Q57634 3.37e-06 52 23 6 167 1 MJ0170 Small-conductance mechanosensitive channel MscMJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O66994 0.00048 45 24 4 125 3 aq_812 Uncharacterized MscS family protein aq_812 Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05925
Feature type CDS
Gene -
Product mechanosensitive ion channel
Location 1261571 - 1262863 (strand: 1)
Length 1293 (nucleotides) / 430 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2244
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16053 miniconductance mechanosensitive channel - -

Protein Sequence

MEQQLRLWLQQQFELNTDYASGAAIAGVISLIVLIGVILHLALHKGLLPYIERRSAGSARPWGALITRTKLFNRFAFLIQGLVLNIQALVWLHRGTTQEILTTGAQAWCLLFGMLLLFSLMDILLTLSRSTQSLSKLPLRGVMQSLKLIIAVLFSILIISLLIGKSPLILLSGLGAMTAVLMLVFKDPIMGLVAGIQLSVNDMLNVGDWLEMPKYGADGAVTDIGLTTVKVQNWDNTITTIPTYALISDSFKNWQGMTSSGGRRIKRSMNLDTTSIRFLDDKEISKLRRSHLISGYIDAKSQEITDYNAQSQEPEDSALNHRRLTNLGTFRAYAEAYIKANPAIHKKMTIMVRQLAPTPDGLPIEIYAFTNVTAWIAYEQIQSDIFDHLFAILPQFHLRVHQTPTGFDMRGIAAHFAVRESESERGTGLA

Flanking regions ( +/- flanking 50bp)

ATTTTCTGCTCACCAGTGAGCCGGTTACATCCCGACCCGGAGACTTTTTTATGGAGCAACAACTGCGGCTGTGGCTGCAACAACAATTCGAACTTAATACCGACTATGCTTCAGGCGCGGCCATAGCCGGTGTCATATCCCTGATAGTCCTCATTGGTGTAATTTTGCACCTCGCGCTGCACAAAGGTCTGCTGCCCTATATAGAGCGCCGCTCCGCCGGAAGCGCCCGCCCGTGGGGCGCATTAATTACCCGCACCAAGCTGTTCAACCGGTTTGCCTTTCTTATTCAGGGACTGGTATTAAATATCCAGGCGCTGGTCTGGCTGCACCGCGGCACCACACAAGAAATTCTGACCACCGGCGCACAGGCATGGTGTCTGTTGTTCGGCATGCTGCTGCTCTTCTCACTGATGGATATCCTGCTGACGCTTTCCCGCAGCACACAATCACTGAGCAAACTCCCCCTGCGCGGTGTAATGCAGAGCCTGAAATTAATTATCGCCGTATTATTCAGTATCCTGATTATTTCATTGCTGATTGGTAAATCGCCGCTGATTTTGCTGAGCGGACTGGGTGCGATGACTGCCGTACTGATGCTGGTCTTTAAAGACCCGATTATGGGGCTGGTTGCGGGAATTCAGTTATCTGTCAATGATATGCTGAATGTAGGTGACTGGCTGGAGATGCCGAAATACGGGGCTGACGGGGCGGTGACCGATATCGGGCTGACCACGGTTAAAGTGCAGAACTGGGATAATACCATCACGACTATCCCGACTTATGCCCTGATTTCCGACTCATTCAAAAACTGGCAGGGTATGACGTCCTCAGGCGGGCGGCGCATTAAGCGCAGCATGAATTTAGACACCACCAGCATTCGTTTTCTGGATGACAAAGAAATCAGTAAACTGCGGCGTTCACACCTTATTTCCGGCTATATTGATGCAAAATCACAGGAAATAACGGATTATAATGCACAGTCACAAGAGCCGGAAGACAGTGCGCTCAACCACCGTAGACTGACAAACCTCGGAACATTCCGCGCCTATGCGGAAGCCTATATTAAAGCAAACCCGGCTATCCATAAAAAAATGACCATTATGGTGCGCCAGTTAGCGCCGACACCGGATGGTCTGCCGATTGAAATCTATGCTTTCACCAATGTGACGGCGTGGATAGCCTATGAGCAGATCCAGTCCGATATTTTCGATCACCTGTTTGCGATCCTGCCGCAATTCCATCTGCGGGTACATCAGACACCAACGGGCTTTGATATGCGCGGCATCGCCGCACACTTTGCTGTCCGTGAATCAGAATCAGAACGCGGAACCGGGTTGGCGTAAAAATTCACATTCTTCCGGGGTGGATTTTCGCCCCAGAATCTCATTACGGT