Homologs in group_1278

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07720 FBDBKF_07720 85.5 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
EHELCC_13550 EHELCC_13550 85.5 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_13995 NLDBIP_13995 85.5 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_08855 LHKJJB_08855 85.5 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_08405 HKOGLL_08405 85.5 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
PMI_RS07660 PMI_RS07660 75.5 Proteus mirabilis HI4320 - mechanosensitive ion channel

Distribution of the homologs in the orthogroup group_1278

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1278

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT5 9.18e-68 223 40 2 279 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 9.18e-68 223 40 2 279 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
Q9ZKG7 7.14e-05 48 21 8 245 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
O25170 0.000232 47 21 8 245 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13365
Feature type CDS
Gene -
Product mechanosensitive ion channel
Location 303399 - 304604 (strand: -1)
Length 1206 (nucleotides) / 401 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1278
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16053 miniconductance mechanosensitive channel - -

Protein Sequence

MEKLIEIYDFIASSAILSAVFLFAVLLVTWFLGRMIFLRVAKRLLSLFTNLTDDETIHSVAKKSASVVSVTLVLYINKMLPTFSAEMNILFNTVCSVFLIINLASLVNDGLDIFILRHSGRVSNRNSSIKGYIEIAKIGVWVVTFILIIALMTSQSPLIIISGFGAIAAVLMFVFQHTLLSFVANILVSNGKVLKLYDWIELPNSNISGEVIDIALHTITIRNWDNTISRIPTKDFLTEKYTNWQPMFSSGGRRIKRSFYIDQSSVSFATEDLLAELRDSEPLRRPLEAMLEESNHSGDINEWMVSNGVTNLQLFRKYILNWIKARGDVRADMYLVVRTMPPTPNGLPVEIYCFTRSTTWVDYEETQSQIFEYVNASAKYFKLDIYQHPSGNDLSNIRRYL

Flanking regions ( +/- flanking 50bp)

TGCCGCCTTCCTGCATCTTGAATGACGTTGGGTATATACTGTGGGGTATTATGGAAAAGTTAATTGAGATATATGATTTCATCGCATCAAGCGCCATATTATCGGCGGTATTTTTGTTTGCGGTTTTATTAGTCACCTGGTTTCTCGGGCGGATGATTTTTTTGCGGGTGGCAAAACGTCTGCTGTCATTATTTACCAATCTGACTGATGACGAGACTATCCACAGCGTTGCCAAAAAAAGTGCCTCTGTCGTTTCTGTCACGCTTGTTCTCTATATTAATAAAATGCTGCCGACATTTTCAGCCGAAATGAATATTCTGTTCAACACGGTATGCAGTGTTTTTCTTATTATCAATCTGGCATCACTGGTTAATGATGGTCTGGATATTTTTATTCTGCGCCATTCCGGACGGGTATCTAACCGAAACAGCTCAATAAAAGGCTATATTGAGATTGCAAAAATCGGGGTATGGGTTGTCACATTCATCTTGATAATAGCCCTGATGACATCTCAGTCACCCCTGATTATTATTTCCGGTTTTGGTGCTATTGCCGCTGTACTGATGTTTGTTTTTCAGCATACGTTATTATCATTTGTGGCAAATATTCTGGTTTCAAACGGTAAAGTATTGAAACTGTATGACTGGATAGAACTGCCCAACAGTAATATCAGCGGGGAAGTGATTGATATTGCACTGCATACTATTACTATCCGTAACTGGGATAATACCATTTCCCGCATTCCGACCAAGGATTTCCTGACGGAGAAATACACCAACTGGCAGCCGATGTTCTCTTCCGGCGGACGCCGTATAAAACGCAGTTTTTATATTGACCAGTCTTCAGTTTCATTTGCCACAGAAGATCTGCTGGCGGAACTGCGGGATTCTGAACCGCTGCGCCGTCCGCTGGAAGCTATGTTAGAAGAGAGCAATCATAGCGGTGATATTAATGAGTGGATGGTAAGCAACGGAGTGACTAATTTACAACTCTTCCGTAAATACATTCTTAACTGGATAAAGGCGCGTGGTGATGTGCGGGCTGATATGTATCTGGTGGTCAGAACGATGCCGCCGACCCCGAACGGGCTACCGGTTGAGATATATTGCTTTACCCGTTCAACAACCTGGGTGGATTATGAGGAAACACAGTCGCAGATTTTTGAGTATGTGAATGCGTCAGCAAAATATTTTAAACTTGATATTTATCAGCATCCGTCAGGAAACGATCTGTCAAATATAAGACGCTATTTGTGATAAATAATATATAACAAGACACCGGCAGATGTACAATATCGTGCCGGTGT