COG0329


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0329, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
Function(s) descr. Amino acid transport and metabolism (E)
Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG0329 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3186 FBDBKF_01525 305126 306034 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S1
1 group_211 FBDBKF_13600 97935 98834 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella morganii S1
2 group_2940 FBDBKF_14935 192 1082 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S1
3 group_3186 EHELCC_00020 2834 3742 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S2
4 group_211 EHELCC_08495 176357 177256 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella morganii S2
5 group_2940 EHELCC_11310 83824 84714 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S2
6 group_3186 NLDBIP_03440 676394 677302 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S4
7 group_211 NLDBIP_08820 176357 177256 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella morganii S4
8 group_2940 NLDBIP_11655 83824 84714 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S4
9 group_3186 LHKJJB_04955 283635 284543 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S3
10 group_211 LHKJJB_05445 79903 80802 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella morganii S3
11 group_2940 LHKJJB_11515 83824 84714 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S3
12 group_3186 HKOGLL_02090 3039 3947 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S5
13 group_211 HKOGLL_05470 160948 161847 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella morganii S5
14 group_2940 HKOGLL_10125 83824 84714 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase Morganella morganii S5
15 group_211 F4V73_RS03165 675342 676241 1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Morganella psychrotolerans
16 group_211 PMI_RS05950 1306389 1307300 1 dihydrodipicolinate synthase family protein Proteus mirabilis HI4320
17 group_211 PMI_RS07620 1662127 1663026 -1 dapA 4-hydroxy-tetrahydrodipicolinate synthase Proteus mirabilis HI4320
18 group_211 PMI_RS14530 3221375 3222304 -1 dihydrodipicolinate synthase family protein Proteus mirabilis HI4320
19 group_2940 PMI_RS14700 3259660 3260553 -1 dihydrodipicolinate synthase family protein Proteus mirabilis HI4320