Orthogroup:group_338


Homologs in group_338

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13600 FBDBKF_13600 Morganella morganii S1 dapA 4-hydroxy-tetrahydrodipicolinate synthase
EHELCC_08495 EHELCC_08495 Morganella morganii S2 dapA 4-hydroxy-tetrahydrodipicolinate synthase
NLDBIP_08820 NLDBIP_08820 Morganella morganii S4 dapA 4-hydroxy-tetrahydrodipicolinate synthase
LHKJJB_05445 LHKJJB_05445 Morganella morganii S3 dapA 4-hydroxy-tetrahydrodipicolinate synthase
HKOGLL_05470 HKOGLL_05470 Morganella morganii S5 dapA 4-hydroxy-tetrahydrodipicolinate synthase
F4V73_RS03165 F4V73_RS03165 Morganella psychrotolerans dapA 4-hydroxy-tetrahydrodipicolinate synthase
PMI_RS07620 PMI_RS07620 Proteus mirabilis HI4320 dapA 4-hydroxy-tetrahydrodipicolinate synthase
PMI_RS14530 PMI_RS14530 Proteus mirabilis HI4320 - dihydrodipicolinate synthase family protein

Distribution of group_338 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_338 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_338

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_338.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dapA 7
2 - 1

Product

# Product Occurence
1 4-hydroxy-tetrahydrodipicolinate synthase 7
2 dihydrodipicolinate synthase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0329 8 EM Amino acid transport and metabolism (E)
Cell wall/membrane/envelope biogenesis (M)		 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00701 8 Dihydrodipicolinate synthetase family

Annotations of the 577 SwissProt hits

Annotation Number of occurrences
4-hydroxy-2-oxoglutarate aldolase, mitochondrial 3
4-hydroxy-tetrahydrodipicolinate synthase 457
4-hydroxy-tetrahydrodipicolinate synthase 1 3
4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic 2
4-hydroxy-tetrahydrodipicolinate synthase 2 3
4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic 2
4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic 4
5-dehydro-4-deoxyglucarate dehydratase 2
L-2-keto-3-deoxyarabonate dehydratase 1
N-acetylneuraminate lyase 44
N-acetylneuraminate lyase 1 1
N-acetylneuraminate lyase 2 1
Probable 2-dehydro-3-deoxy-D-pentonate aldolase YjhH 1
Probable 5-dehydro-4-deoxyglucarate dehydratase 39
Probable 5-dehydro-4-deoxyglucarate dehydratase 1 2
Probable 5-dehydro-4-deoxyglucarate dehydratase 2 1
Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE 1
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase 1
Uncharacterized DapA-like lyase 1
Uncharacterized DapA-like lyase OE_1665R 1
Uncharacterized DapA-like lyase PF0657 1
Uncharacterized DapA-like lyase PH0847 1
Uncharacterized DapA-like lyase PYRAB12600 1
Uncharacterized DapA-like lyase TK1237 1
Uncharacterized DapA-like lyase TON_0506 1
Uncharacterized DapA-like lyase Tpen_1666 1
Uncharacterized DapA-like lyase VNG_0444G 1

Protein length

Min length 299
Max length 309
Mean length (sd) 300.2 (3.5)
Median length 299.0

Protein length distribution