Orthogroup:group_2519


Homologs in group_2519

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01525 FBDBKF_01525 Morganella morganii S1 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
EHELCC_00020 EHELCC_00020 Morganella morganii S2 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
NLDBIP_03440 NLDBIP_03440 Morganella morganii S4 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
LHKJJB_04955 LHKJJB_04955 Morganella morganii S3 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
HKOGLL_02090 HKOGLL_02090 Morganella morganii S5 dapA 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase
PMI_RS05950 PMI_RS05950 Proteus mirabilis HI4320 - dihydrodipicolinate synthase family protein

Distribution of group_2519 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2519 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2519

Orthogroup content: 6 members

Help

This page summarizes the annotation of all members of the orthologous group group_2519.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dapA 5
2 - 1

Product

# Product Occurence
1 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase 5
2 dihydrodipicolinate synthase family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0329 6 EM Amino acid transport and metabolism (E)
Cell wall/membrane/envelope biogenesis (M)		 4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K22397 5 2-dehydro-3-deoxy-D-pentonate aldolase [EC:4.1.2.28] Pentose and glucuronate interconversions
Metabolic pathways		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00701 6 Dihydrodipicolinate synthetase family

Annotations of the 553 SwissProt hits

Annotation Number of occurrences
2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase 1
2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4
4-hydroxy-tetrahydrodipicolinate synthase 444
4-hydroxy-tetrahydrodipicolinate synthase 1 3
4-hydroxy-tetrahydrodipicolinate synthase 2 3
N-acetylneuraminate lyase 80
N-acetylneuraminate lyase 1 1
N-acetylneuraminate lyase 2 1
N-acetylneuraminate lyase A 1
N-acetylneuraminate lyase B 1
Probable 2-dehydro-3-deoxy-D-pentonate aldolase YjhH 1
Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE 1
Uncharacterized DapA-like lyase 1
Uncharacterized DapA-like lyase OE_1665R 1
Uncharacterized DapA-like lyase PF0657 1
Uncharacterized DapA-like lyase PH0847 1
Uncharacterized DapA-like lyase PYRAB12600 1
Uncharacterized DapA-like lyase Pisl_0309 1
Uncharacterized DapA-like lyase TK1237 1
Uncharacterized DapA-like lyase TON_0506 1
Uncharacterized DapA-like lyase Ta1157 1
Uncharacterized DapA-like lyase Tneu_1812 1
Uncharacterized DapA-like lyase Tpen_1666 1
Uncharacterized DapA-like lyase VNG_0444G 1

Protein length

Min length 302
Max length 303
Mean length (sd) 302.2 (0.4)
Median length 302.0

Protein length distribution