Orthogroup:group_373



Homologs in group_373

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18045 FBDBKF_18045 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_19670 FBDBKF_19670 Morganella morganii S1 - XRE family transcriptional regulator
EHELCC_16745 EHELCC_16745 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_17705 NLDBIP_17705 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_17625 LHKJJB_17625 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_17440 HKOGLL_17440 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS10085 F4V73_RS10085 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS01380 PMI_RS01380 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_373 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_373 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_373

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_373.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 5
2 - 3

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 5
2 XRE family transcriptional regulator 1
3 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 8 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 6 Helix-turn-helix
PF13560 2 Helix-turn-helix domain

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator RamB 1
Putative HTH-type transcriptional regulatory protein Mpal_0031 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 89
Max length 294
Mean length (sd) 120.0 (71.0)
Median length 89.0

Protein length distribution