Homologs in group_373

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18045 FBDBKF_18045 24.1 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_19670 FBDBKF_19670 29.7 Morganella morganii S1 - XRE family transcriptional regulator
EHELCC_16745 EHELCC_16745 24.1 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_17705 NLDBIP_17705 24.1 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_17625 LHKJJB_17625 24.1 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_17440 HKOGLL_17440 24.1 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS10085 F4V73_RS10085 39.6 Morganella psychrotolerans - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_373

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_373

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01380
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 340636 - 341520 (strand: 1)
Length 885 (nucleotides) / 294 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_373
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF13560 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MSYISREKIDYLSIGHRLRAYRIASSLKAEDVAESLGISRAAVYRLEKGEIVKIETLDNLARLLNTSLSSLLGINTEYYSSANGFFERMRQLETQSSHIYTHFEPFSYLLTSDCYDKTLVEMLTEASPENALTKKQQEVLSILKERKKHQSLHSPHIYNLISQQQIEKFLYVGMLGSVNVSKAIQQERKQRAKQEISHLIEKLEQKNSHLNIAIISDTMPSLTFQLFYQNKAPLSLAVSPFRLGEFPNVSTGIATVSSSTEAIFQYQSLFDTLWAKAIKNDDAITRLKEIISHY

Flanking regions ( +/- flanking 50bp)

GATGTCTATTTTTTATACATATTCTTTATCTTTGGTGGAGCAATAATAAAATGTCTTATATATCAAGAGAAAAGATAGATTACTTGTCCATTGGTCATCGACTGCGTGCTTATCGTATTGCCTCCTCATTAAAAGCTGAAGATGTAGCTGAAAGTTTAGGGATCTCCCGTGCCGCTGTCTATCGATTAGAAAAGGGTGAAATCGTTAAAATTGAGACATTAGATAATCTTGCTCGATTACTTAACACCTCATTAAGTAGCTTATTAGGTATTAATACGGAGTATTACTCTAGCGCTAATGGTTTTTTTGAACGAATGCGCCAACTTGAAACACAATCTTCCCATATTTATACCCATTTCGAACCCTTTTCTTATTTATTAACCTCTGATTGTTATGATAAAACGCTTGTCGAAATGTTAACAGAAGCCTCTCCTGAAAATGCGCTAACAAAGAAGCAACAAGAAGTTTTATCTATTTTAAAAGAGCGTAAAAAGCATCAATCATTACACTCACCGCATATTTATAATTTAATTAGTCAACAGCAAATCGAAAAATTTCTTTATGTTGGTATGCTAGGCTCTGTTAATGTAAGTAAAGCCATTCAACAAGAAAGAAAACAACGCGCAAAACAAGAAATCAGCCATTTAATTGAAAAGTTAGAGCAAAAAAATAGTCATCTTAATATTGCGATTATTTCAGATACGATGCCATCTTTAACCTTTCAATTGTTTTATCAAAACAAAGCACCTCTCTCTTTAGCGGTTAGTCCATTTCGTTTAGGTGAATTTCCTAATGTAAGTACGGGTATTGCGACAGTATCTTCATCAACAGAAGCAATATTCCAATATCAATCTCTGTTTGATACGTTATGGGCAAAAGCAATAAAAAATGATGATGCCATTACACGCTTAAAAGAGATTATCAGTCATTATTGATTAGCTAGAACACCTAATGTTTCCGCTAAGATATCTGCAGCTATTGCAAT