Homologs in group_4304

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4304

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4304

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01380
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 340636 - 341520 (strand: 1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4304
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF13560 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MSYISREKIDYLSIGHRLRAYRIASSLKAEDVAESLGISRAAVYRLEKGEIVKIETLDNLARLLNTSLSSLLGINTEYYSSANGFFERMRQLETQSSHIYTHFEPFSYLLTSDCYDKTLVEMLTEASPENALTKKQQEVLSILKERKKHQSLHSPHIYNLISQQQIEKFLYVGMLGSVNVSKAIQQERKQRAKQEISHLIEKLEQKNSHLNIAIISDTMPSLTFQLFYQNKAPLSLAVSPFRLGEFPNVSTGIATVSSSTEAIFQYQSLFDTLWAKAIKNDDAITRLKEIISHY

Flanking regions ( +/- flanking 50bp)

GATGTCTATTTTTTATACATATTCTTTATCTTTGGTGGAGCAATAATAAAATGTCTTATATATCAAGAGAAAAGATAGATTACTTGTCCATTGGTCATCGACTGCGTGCTTATCGTATTGCCTCCTCATTAAAAGCTGAAGATGTAGCTGAAAGTTTAGGGATCTCCCGTGCCGCTGTCTATCGATTAGAAAAGGGTGAAATCGTTAAAATTGAGACATTAGATAATCTTGCTCGATTACTTAACACCTCATTAAGTAGCTTATTAGGTATTAATACGGAGTATTACTCTAGCGCTAATGGTTTTTTTGAACGAATGCGCCAACTTGAAACACAATCTTCCCATATTTATACCCATTTCGAACCCTTTTCTTATTTATTAACCTCTGATTGTTATGATAAAACGCTTGTCGAAATGTTAACAGAAGCCTCTCCTGAAAATGCGCTAACAAAGAAGCAACAAGAAGTTTTATCTATTTTAAAAGAGCGTAAAAAGCATCAATCATTACACTCACCGCATATTTATAATTTAATTAGTCAACAGCAAATCGAAAAATTTCTTTATGTTGGTATGCTAGGCTCTGTTAATGTAAGTAAAGCCATTCAACAAGAAAGAAAACAACGCGCAAAACAAGAAATCAGCCATTTAATTGAAAAGTTAGAGCAAAAAAATAGTCATCTTAATATTGCGATTATTTCAGATACGATGCCATCTTTAACCTTTCAATTGTTTTATCAAAACAAAGCACCTCTCTCTTTAGCGGTTAGTCCATTTCGTTTAGGTGAATTTCCTAATGTAAGTACGGGTATTGCGACAGTATCTTCATCAACAGAAGCAATATTCCAATATCAATCTCTGTTTGATACGTTATGGGCAAAAGCAATAAAAAATGATGATGCCATTACACGCTTAAAAGAGATTATCAGTCATTATTGATTAGCTAGAACACCTAATGTTTCCGCTAAGATATCTGCAGCTATTGCAAT