COG3620


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3620, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)
Function(s) descr. Transcription (K)

Occurence in the database

COG3620 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_174 FBDBKF_00870 155845 156147 -1 higA Antitoxin HigA Morganella morganii S1
1 group_174 EHELCC_00675 152721 153023 1 higA Antitoxin HigA Morganella morganii S2
2 group_174 NLDBIP_02785 527113 527415 -1 higA Antitoxin HigA Morganella morganii S4
3 group_174 LHKJJB_04300 134354 134656 -1 higA Antitoxin HigA Morganella morganii S3
4 group_174 HKOGLL_02745 152926 153228 1 higA Antitoxin HigA Morganella morganii S5
5 group_174 F4V73_RS06860 1421101 1421403 -1 XRE family transcriptional regulator Morganella psychrotolerans
6 group_174 F4V73_RS10155 142506 142757 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
7 group_174 F4V73_RS13455 324806 325105 1 XRE family transcriptional regulator Morganella psychrotolerans
8 group_4639 PMI_RS14215 3155188 3155496 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320