COG3226


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3226, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator YbjK
Function(s) descr. Transcription (K)

Occurence in the database

COG3226 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1478 FBDBKF_09540 6362 7048 1 cecR transcriptional regulator CecR Morganella morganii S1
1 group_1478 EHELCC_04340 198327 199013 1 cecR transcriptional regulator CecR Morganella morganii S2
2 group_1478 NLDBIP_04340 198123 198809 1 cecR transcriptional regulator CecR Morganella morganii S4
3 group_1478 LHKJJB_14290 136569 137255 -1 cecR transcriptional regulator CecR Morganella morganii S3
4 group_1478 HKOGLL_12245 7143 7829 1 cecR transcriptional regulator CecR Morganella morganii S5
5 group_1478 F4V73_RS00825 171096 171782 -1 cecR transcriptional regulator CecR Morganella psychrotolerans
6 group_3669 PMI_RS07070 1542890 1543492 -1 betI transcriptional regulator BetI Proteus mirabilis HI4320
7 group_401 PMI_RS13430 2974801 2975394 -1 TetR/AcrR family transcriptional regulator Proteus mirabilis HI4320