Homologs in group_1342

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08320 FBDBKF_08320 55.5 Morganella morganii S1 hemD uroporphyrinogen-III synthase
EHELCC_13205 EHELCC_13205 55.5 Morganella morganii S2 hemD uroporphyrinogen-III synthase
NLDBIP_13545 NLDBIP_13545 55.5 Morganella morganii S4 hemD uroporphyrinogen-III synthase
LHKJJB_13010 LHKJJB_13010 55.5 Morganella morganii S3 hemD uroporphyrinogen-III synthase
HKOGLL_12020 HKOGLL_12020 55.5 Morganella morganii S5 hemD uroporphyrinogen-III synthase
F4V73_RS09520 F4V73_RS09520 54.3 Morganella psychrotolerans hemD uroporphyrinogen-III synthase

Distribution of the homologs in the orthogroup group_1342

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1342

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q59683 7.35e-134 378 94 0 194 3 hemD Uroporphyrinogen-III synthase Proteus mirabilis
P09126 2.81e-74 229 50 1 245 3 hemD Uroporphyrinogen-III synthase Escherichia coli (strain K12)
Q9L6Q3 2.94e-72 223 50 1 245 3 hemD Uroporphyrinogen-III synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P48246 1.22e-23 98 31 5 232 1 hemD Uroporphyrinogen-III synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P42452 9.52e-07 52 25 3 171 3 hemD Uroporphyrinogen-III synthase Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16575
Feature type CDS
Gene hemD
Product uroporphyrinogen-III synthase
Location 3652517 - 3653254 (strand: -1)
Length 738 (nucleotides) / 245 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1342
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02602 Uroporphyrinogen-III synthase HemD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1587 Coenzyme transport and metabolism (H) H Uroporphyrinogen-III synthase

Kegg Ortholog Annotation(s)

Protein Sequence

MSILITRPSPAGEQLTQRLIDAGKHAFHAPLIEIAAGKELSILENKLNKLSTGDYLFLLSKNAVWYANWQLNQLQQSWPDTLFYYGIGQSTAEEFQQLTGHSIRYPEFGETSEDLLALSSLQQIENKRVLLLRGNGGRELLATTLRQRGAIVDECECYQRLFIDYVSEEFALKWKNAQVDTFVVTSGEMLQQLFYLVAGSEKAWLLNSHLVVVSKRLATIASTLGFKKITVAESANNDALFHALI

Flanking regions ( +/- flanking 50bp)

AAAGGAGCTAGAGAGATTTTAACCGCTGTATATCAAGGTAATACAGCGATATGAGTATTTTAATCACTCGTCCTAGCCCAGCAGGAGAACAACTTACGCAACGCTTAATTGATGCGGGAAAGCATGCTTTTCATGCACCTTTAATAGAAATAGCCGCGGGTAAAGAGCTTTCCATATTAGAAAACAAATTAAATAAGCTAAGTACGGGTGATTACCTTTTTTTACTTTCTAAAAATGCGGTGTGGTACGCAAACTGGCAACTAAATCAATTACAACAATCATGGCCAGATACGCTATTCTATTATGGAATAGGTCAAAGCACCGCTGAAGAGTTTCAGCAATTAACAGGACATTCTATACGTTATCCAGAATTTGGAGAAACCAGTGAAGACCTACTGGCCTTGTCTTCACTTCAACAAATAGAAAACAAGCGAGTACTACTACTAAGAGGCAATGGTGGTCGCGAACTACTTGCCACAACATTACGTCAACGCGGTGCAATTGTTGATGAATGTGAATGTTATCAGCGTCTATTTATTGATTATGTATCTGAAGAGTTTGCGCTAAAGTGGAAAAATGCCCAAGTGGATACCTTTGTGGTCACCAGTGGCGAAATGTTGCAACAACTCTTTTATCTAGTCGCTGGATCTGAAAAAGCATGGCTGTTAAACAGTCATTTAGTGGTGGTCAGTAAACGATTAGCAACAATAGCTAGCACATTAGGCTTTAAAAAAATAACCGTTGCTGAAAGTGCCAATAATGATGCTTTATTTCATGCATTAATATAGAACTTAAATGAGACGCCGATATGACGGAACAGAAAAATACGAATGAAAAT