Homologs in group_1398

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08320 FBDBKF_08320 82.4 Morganella morganii S1 hemD uroporphyrinogen-III synthase
EHELCC_13205 EHELCC_13205 82.4 Morganella morganii S2 hemD uroporphyrinogen-III synthase
NLDBIP_13545 NLDBIP_13545 82.4 Morganella morganii S4 hemD uroporphyrinogen-III synthase
LHKJJB_13010 LHKJJB_13010 82.4 Morganella morganii S3 hemD uroporphyrinogen-III synthase
HKOGLL_12020 HKOGLL_12020 82.4 Morganella morganii S5 hemD uroporphyrinogen-III synthase
PMI_RS16575 PMI_RS16575 54.3 Proteus mirabilis HI4320 hemD uroporphyrinogen-III synthase

Distribution of the homologs in the orthogroup group_1398

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1398

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09126 1.66e-77 237 51 1 246 3 hemD Uroporphyrinogen-III synthase Escherichia coli (strain K12)
Q9L6Q3 8.29e-75 230 50 1 246 3 hemD Uroporphyrinogen-III synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q59683 2.12e-60 192 53 0 193 3 hemD Uroporphyrinogen-III synthase Proteus mirabilis
P48246 7.24e-25 102 33 5 236 1 hemD Uroporphyrinogen-III synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P42452 5.92e-11 64 32 8 204 3 hemD Uroporphyrinogen-III synthase Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09520
Feature type CDS
Gene hemD
Product uroporphyrinogen-III synthase
Location 3309 - 4046 (strand: -1)
Length 738 (nucleotides) / 245 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1398
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02602 Uroporphyrinogen-III synthase HemD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1587 Coenzyme transport and metabolism (H) H Uroporphyrinogen-III synthase

Kegg Ortholog Annotation(s)

Protein Sequence

MTILVTRPSPAGETLVTALRARGQNAISAPLIRIQPGNELPLLTTKMAALSPGDTLFLLSKNAVYHANERLIQQNYLWSDKFCYYGIGQSTAQYFQALTGLPAGFMSGGETSEHLLTRPDLQTLTGRRILLLRGNGGREHLAQTLRERGADVNYCECYRREPVEYDGGECALRWQEQQVNTLVVTSGEMLQLLRQLIPPAHISWLFQCRIVVVSDRLAAIAHSLGWQHIIIARSADNEALLQALQ

Flanking regions ( +/- flanking 50bp)

AAAGGCGCACGGGCTATCCTGACTGAGGTTTATCAGGGGCATGCACCTGCATGACCATCCTGGTCACCCGCCCTTCCCCGGCCGGTGAAACCCTGGTCACCGCACTGCGCGCGCGCGGGCAGAATGCCATTTCTGCCCCGCTGATCCGGATACAGCCCGGAAACGAACTGCCGCTGCTGACCACAAAAATGGCGGCACTTTCTCCCGGTGATACCCTTTTTCTGCTGTCAAAGAATGCGGTTTATCACGCAAATGAACGGCTGATTCAACAGAATTACCTGTGGTCTGATAAGTTTTGCTATTATGGTATCGGGCAGTCAACTGCACAGTATTTTCAGGCTCTGACCGGATTACCCGCCGGGTTTATGTCCGGCGGCGAAACCAGTGAGCATCTGCTGACCCGCCCGGATTTACAGACACTGACCGGACGCCGTATCCTTTTACTGCGCGGTAACGGCGGCAGAGAGCATCTTGCTCAGACCCTGCGCGAACGCGGTGCTGACGTAAATTACTGTGAATGTTACCGCCGGGAGCCTGTTGAGTATGATGGCGGAGAATGCGCCCTGCGGTGGCAGGAACAACAGGTTAACACCCTGGTGGTCACCAGCGGCGAAATGCTGCAACTGCTCAGACAACTTATTCCGCCGGCACATATCAGCTGGTTATTTCAGTGCCGGATAGTCGTTGTCAGTGACAGACTGGCGGCGATTGCACACTCTCTGGGCTGGCAACATATTATTATTGCCCGCAGCGCAGACAATGAAGCCTTACTTCAGGCTCTACAATGAATAAAAAATATGGGACGCCACTTATGACGGAACTCGAAAAAAAAACCGGA