Homologs in group_1398

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08320 FBDBKF_08320 100.0 Morganella morganii S1 hemD uroporphyrinogen-III synthase
EHELCC_13205 EHELCC_13205 100.0 Morganella morganii S2 hemD uroporphyrinogen-III synthase
NLDBIP_13545 NLDBIP_13545 100.0 Morganella morganii S4 hemD uroporphyrinogen-III synthase
LHKJJB_13010 LHKJJB_13010 100.0 Morganella morganii S3 hemD uroporphyrinogen-III synthase
F4V73_RS09520 F4V73_RS09520 82.4 Morganella psychrotolerans hemD uroporphyrinogen-III synthase
PMI_RS16575 PMI_RS16575 55.5 Proteus mirabilis HI4320 hemD uroporphyrinogen-III synthase

Distribution of the homologs in the orthogroup group_1398

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1398

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09126 1.63e-78 239 52 1 246 3 hemD Uroporphyrinogen-III synthase Escherichia coli (strain K12)
Q9L6Q3 1.36e-75 232 51 1 246 3 hemD Uroporphyrinogen-III synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q59683 6.23e-62 196 55 0 193 3 hemD Uroporphyrinogen-III synthase Proteus mirabilis
P48246 1.15e-20 90 33 4 230 1 hemD Uroporphyrinogen-III synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P42452 4.85e-08 55 28 6 212 3 hemD Uroporphyrinogen-III synthase Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q8KCJ3 0.000806 43 24 5 158 3 hemD Uroporphyrinogen-III synthase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12020
Feature type CDS
Gene hemD
Product uroporphyrinogen-III synthase
Location 124362 - 125099 (strand: 1)
Length 738 (nucleotides) / 245 (amino acids)
In genomic island -

Contig

Accession ZDB_689
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1398
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02602 Uroporphyrinogen-III synthase HemD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1587 Coenzyme transport and metabolism (H) H Uroporphyrinogen-III synthase

Kegg Ortholog Annotation(s)

Protein Sequence

MTILVTRPSPAGEALVSALRSRGQDALSAPLIRISPGHELPLLIAKTEALSPGDALFLLSKNAVYHANEQLIQQNYLWSDKLCYYGIGQSTANCFEQLTGLPAAFMPGGETSEHLLTLPDLQDMTGRRALLLRGNGGREHLAQTLRERGAVVDYCECYRRGPVNYDGGECALLWQQQQVQTLVVTSGEMLHLLRQLIPAAHLGWLLQCRIIVVSDRLAAIAQSLGWQNIDVAAGADNEALLQALQ

Flanking regions ( +/- flanking 50bp)

AACGGCGCACGGGCTATCCTGACGGAAGTCTATCAGGGGCATACGCCTGCATGACCATCCTGGTCACCCGCCCCTCACCGGCCGGTGAAGCCCTGGTCAGCGCCCTGCGCTCACGCGGGCAGGATGCCCTTTCTGCCCCGCTCATCCGTATTTCCCCGGGACATGAGCTGCCGCTGCTGATTGCCAAAACAGAGGCACTTTCTCCCGGAGATGCCCTTTTTCTGCTGTCAAAGAATGCGGTTTATCACGCAAATGAACAGCTTATTCAACAGAATTACCTGTGGTCTGATAAGCTTTGCTATTATGGGATTGGTCAGTCAACCGCTAACTGCTTTGAACAACTGACCGGATTACCCGCCGCCTTTATGCCCGGCGGGGAAACCAGCGAACATCTGCTGACCCTGCCGGACTTACAGGATATGACCGGCCGCCGCGCACTTCTGCTGCGCGGTAACGGCGGCAGAGAGCATCTGGCACAGACACTGCGCGAACGGGGCGCAGTGGTGGATTACTGTGAATGCTACCGCCGCGGACCCGTAAATTACGACGGCGGGGAATGCGCCCTGTTGTGGCAGCAGCAACAGGTTCAGACGCTGGTCGTGACCAGCGGCGAAATGCTGCACCTGCTGCGGCAGCTGATACCGGCCGCGCACCTCGGCTGGCTGCTGCAATGCCGGATTATTGTTGTCAGTGACAGACTGGCAGCTATCGCACAATCACTGGGCTGGCAGAATATTGATGTCGCCGCCGGTGCAGATAATGAAGCCTTACTTCAGGCTCTTCAATGAACAGACATGGGACGCCACGAATGACGGAACACGAAAAAAAACCCGGATCG