Homologs in group_308

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08900 FBDBKF_08900 22.3 Morganella morganii S1 - Integrase catalytic domain-containing protein
FBDBKF_16590 FBDBKF_16590 22.5 Morganella morganii S1 - IS3 family transposase
EHELCC_12625 EHELCC_12625 22.3 Morganella morganii S2 - Integrase catalytic domain-containing protein
NLDBIP_12965 NLDBIP_12965 22.3 Morganella morganii S4 - Integrase catalytic domain-containing protein
LHKJJB_13590 LHKJJB_13590 22.3 Morganella morganii S3 - Integrase catalytic domain-containing protein
HKOGLL_11440 HKOGLL_11440 22.3 Morganella morganii S5 - Integrase catalytic domain-containing protein
F4V73_RS01605 F4V73_RS01605 21.2 Morganella psychrotolerans - IS3 family transposase

Distribution of the homologs in the orthogroup group_308

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_308

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q88419 7.42e-10 63 29 8 192 3 ORF3 Putative integrase ORF3 Spiroplasma virus SpV1-C74
P25438 2.77e-06 52 28 7 161 4 None Insertion element IS476 uncharacterized 39.2 kDa protein Xanthomonas euvesicatoria
Q32J95 3.52e-05 46 33 0 69 4 ylbG Uncharacterized protein YlbG Shigella dysenteriae serotype 1 (strain Sd197)
P77688 3.52e-05 46 33 0 69 4 ylbG Protein YlbG Escherichia coli (strain K12)
Q7DC27 3.52e-05 46 33 0 69 4 ylbG Uncharacterized protein YlbG Escherichia coli O157:H7
Q324Z5 3.62e-05 46 33 0 69 4 ylbG Uncharacterized protein YlbG Shigella boydii serotype 4 (strain Sb227)
P55598 0.00015 45 38 2 67 4 NGR_a02220 Uncharacterized protein y4oM Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15560
Feature type CDS
Gene -
Product IS481 family transposase
Location 3462173 - 3463177 (strand: 1)
Length 1005 (nucleotides) / 334 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_308
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF13518 Helix-turn-helix domain
PF13683 Integrase core domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2801 Mobilome: prophages, transposons (X) X Transposase InsO and inactivated derivatives

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07497 putative transposase - -

Protein Sequence

MNIKAKRDIAHKTKILNHARESKNIAKTCRHFGISRETFYTWKRAYERDGEKGLINNKPCPENPTRRVAKHIEELVIYLRNLRNLRNLRNLRNLRNLRNLRNLRNLRNLRNLRTTYHFGPQRIAWYLLRFHNIKISRSGCYYVLLRNKLNQLPQNQRSRSKPLFKRYQKQVPGHHVQVDVKFLFFNTPDGQRIKRFQYTAIDDATRIRALKIYEKHNQANAIDFINYVVNKFPFRIKMIRTDNGHEFQSKFNWHIHDLGMEHVYIKPATPRLNGKVERSHLTDKQEFYQLIDYKDDVDLHEKLAEWEAFYNCHRPHSAHAGKTPYEVLKNKLGL

Flanking regions ( +/- flanking 50bp)

ACTTCGGCTGACAATTAGTTTTTTCTAGTTGTAGCCGGAGGTCAGATATGATGAATATTAAAGCTAAACGAGATATTGCACATAAAACAAAAATCTTAAATCATGCCCGCGAGAGCAAAAATATTGCTAAAACTTGTCGTCATTTTGGGATCAGTAGAGAAACTTTTTATACTTGGAAAAGAGCTTATGAACGAGATGGCGAAAAAGGATTAATCAACAATAAACCCTGTCCTGAAAATCCAACCAGAAGAGTTGCAAAACATATCGAAGAGCTGGTTATTTATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTAATCTGCGTACGACTTACCATTTTGGCCCCCAGCGCATCGCTTGGTATCTTCTGCGGTTTCATAACATCAAAATATCACGCTCTGGCTGCTACTATGTATTACTAAGAAACAAATTAAACCAACTTCCCCAAAATCAGCGAAGTCGCTCTAAACCACTATTTAAACGTTATCAGAAACAAGTGCCCGGGCACCATGTTCAAGTTGATGTGAAGTTCCTATTTTTTAATACGCCAGATGGTCAACGAATTAAACGTTTTCAATATACGGCGATTGATGATGCGACACGGATCAGAGCACTTAAAATTTATGAAAAGCACAATCAGGCTAATGCCATTGATTTTATTAATTATGTTGTAAATAAATTTCCCTTTAGAATCAAAATGATTAGAACGGATAATGGTCACGAATTCCAATCAAAATTTAATTGGCATATTCATGATCTCGGGATGGAGCATGTTTATATCAAGCCTGCAACCCCCAGATTGAATGGAAAGGTAGAGCGTTCTCATTTAACAGATAAACAAGAGTTTTATCAATTAATCGATTATAAGGATGATGTCGATTTACATGAAAAATTAGCTGAATGGGAGGCTTTTTATAATTGTCATCGCCCTCACTCAGCGCATGCTGGTAAAACACCATATGAAGTGTTAAAAAATAAGCTTGGTCTTTAAGACTAAACGTCAGCCGAGGTTCTGAGTGACACAATCAGCTAACCACATGA