Homologs in group_1598

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10430 FBDBKF_10430 82.1 Morganella morganii S1 rpe ribulose-phosphate 3-epimerase
EHELCC_14765 EHELCC_14765 82.1 Morganella morganii S2 rpe ribulose-phosphate 3-epimerase
NLDBIP_14595 NLDBIP_14595 82.1 Morganella morganii S4 rpe ribulose-phosphate 3-epimerase
LHKJJB_14750 LHKJJB_14750 82.1 Morganella morganii S3 rpe ribulose-phosphate 3-epimerase
HKOGLL_13370 HKOGLL_13370 82.1 Morganella morganii S5 rpe ribulose-phosphate 3-epimerase
F4V73_RS14125 F4V73_RS14125 83.0 Morganella psychrotolerans rpe ribulose-phosphate 3-epimerase

Distribution of the homologs in the orthogroup group_1598

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1598

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG10 1.29e-136 385 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Shigella flexneri
P0AG07 1.29e-136 385 82 0 223 1 rpe Ribulose-phosphate 3-epimerase Escherichia coli (strain K12)
P0AG08 1.29e-136 385 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AG09 1.29e-136 385 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O157:H7
P44756 8.76e-133 375 78 0 223 3 rpe Ribulose-phosphate 3-epimerase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45455 3.79e-132 373 86 0 210 3 rpe Ribulose-phosphate 3-epimerase Serratia marcescens
P57603 4.95e-111 320 67 0 220 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K940 7.42e-107 310 68 0 209 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q04539 6.06e-99 290 66 3 219 3 rpe2 Ribulose-phosphate 3-epimerase 2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P40117 7.38e-99 290 65 3 219 3 rpe1 Ribulose-phosphate 3-epimerase 1 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q89A59 1.65e-80 243 53 1 225 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P74061 2.4e-74 227 52 2 217 1 rpe Ribulose-phosphate 3-epimerase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O34557 4.25e-73 224 52 2 212 3 rpe Ribulose-phosphate 3-epimerase Bacillus subtilis (strain 168)
Q9ZTP5 3.21e-68 213 46 2 223 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Oryza sativa subsp. japonica
Q43843 2.29e-67 211 47 2 216 1 None Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) Solanum tuberosum
Q9SAU2 3.42e-66 208 47 2 217 2 RPE Ribulose-5-phosphate-3-epimerase, chloroplastic Arabidopsis thaliana
Q43157 4.45e-66 208 47 2 216 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Spinacia oleracea
O67098 6.88e-65 203 47 1 203 3 rpe Ribulose-phosphate 3-epimerase Aquifex aeolicus (strain VF5)
P51013 6.12e-64 201 50 4 214 3 rpe Ribulose-phosphate 3-epimerase Rhodospirillum rubrum
Q9L0Z5 1.73e-61 194 43 2 218 3 rpe Ribulose-phosphate 3-epimerase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9CCP9 4.12e-61 193 50 4 201 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium leprae (strain TN)
P9WI51 1.28e-60 192 47 4 220 1 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WI50 1.28e-60 192 47 4 220 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65761 1.28e-60 192 47 4 220 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P51012 1.31e-60 192 48 3 203 3 rpe Ribulose-phosphate 3-epimerase Rhodobacter capsulatus
O66107 2.16e-55 179 45 3 204 3 rpe Ribulose-phosphate 3-epimerase Treponema pallidum (strain Nichols)
Q58093 6.78e-55 178 42 2 212 3 rpe Ribulose-phosphate 3-epimerase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9ZJ75 1.63e-54 176 44 2 212 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain J99 / ATCC 700824)
P56188 7.7e-54 175 44 3 217 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain ATCC 700392 / 26695)
Q6FL81 1.04e-50 167 37 2 232 3 RPE1 Ribulose-phosphate 3-epimerase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q96AT9 5.4e-50 165 40 2 212 1 RPE Ribulose-phosphate 3-epimerase Homo sapiens
Q5R5Y2 5.95e-50 165 40 2 212 2 RPE Ribulose-phosphate 3-epimerase Pongo abelii
Q8VEE0 1.84e-49 164 40 2 212 1 Rpe Ribulose-phosphate 3-epimerase Mus musculus
P46969 3.36e-49 164 38 2 229 1 RPE1 Ribulose-phosphate 3-epimerase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9SE42 4.32e-49 163 40 6 220 1 Os09g0505700 Ribulose-phosphate 3-epimerase, cytoplasmic isoform Oryza sativa subsp. japonica
O14105 2.43e-47 158 38 2 221 3 SPAC31G5.05c Ribulose-phosphate 3-epimerase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q2QD12 3.59e-46 155 39 2 212 1 RPEL1 Ribulose-phosphate 3-epimerase-like protein 1 Homo sapiens
Q9PKR7 6.16e-46 155 39 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia muridarum (strain MoPn / Nigg)
Q755M2 1.08e-45 154 37 3 229 3 RPE1 Ribulose-phosphate 3-epimerase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
O84123 4.36e-45 153 37 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z8Z9 2.95e-42 145 39 2 202 3 rpe Ribulose-phosphate 3-epimerase Chlamydia pneumoniae
P32719 2.38e-39 138 36 4 204 1 alsE D-allulose-6-phosphate 3-epimerase Escherichia coli (strain K12)
Q8SRP6 5.25e-26 103 32 5 214 3 RPE1 Ribulose-phosphate 3-epimerase Encephalitozoon cuniculi (strain GB-M1)
P75522 5.28e-26 103 33 7 205 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P39362 3.69e-24 98 28 2 208 3 sgcE Protein SgcE Escherichia coli (strain K12)
P47358 7.69e-22 92 32 7 194 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q8Z2Y1 3.73e-16 78 25 4 234 3 lsrE Putative epimerase LsrE Salmonella typhi
Q5PJE1 3.97e-16 78 26 3 213 3 lsrE Putative epimerase LsrE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKP8 6.28e-16 77 26 5 234 2 lsrE Putative epimerase LsrE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG7 6.28e-16 77 26 5 234 3 lsrE Putative epimerase LsrE Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HD7 6.28e-16 77 26 5 234 3 lsrE Putative epimerase LsrE Salmonella choleraesuis (strain SC-B67)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14990
Feature type CDS
Gene rpe
Product ribulose-phosphate 3-epimerase
Location 3327016 - 3327690 (strand: 1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1598
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00834 Ribulose-phosphate 3 epimerase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0036 Carbohydrate transport and metabolism (G) G Pentose-5-phosphate-3-epimerase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG046612 ribulose-phosphate 3-epimerase VF0543 Immune modulation

Protein Sequence

MKDFLIAPSILSADFARLGEDTEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRNYGITAPIDVHLMVKPVDRIIPDFAQAGATYISFHAEASEHVDRTIQLIKDCGCKAGLVLNPATPLNYLDYVMDKLDLILLMSVNPGFGGQSFIPKTLDKLRQVRKMIDDGGYDIRLEIDGGVKVDNIAEIAQAGADMFVAGSAIFNQPDYKQVIDNMRRELDKVSK

Flanking regions ( +/- flanking 50bp)

AAATAATCGTTAACACTTCCCGACAATGGGAGTGTTGTCAGGAGAACGCGATGAAAGATTTTCTGATTGCCCCTTCTATTTTATCTGCAGATTTCGCCCGCCTTGGTGAAGATACGGAGAAAGTGCTCGCTGCAGGTGCTGATGTGGTTCATTTTGATGTAATGGATAATCACTATGTCCCTAACTTAACGTTCGGTGCACCAATTTGTAAAGCGCTACGCAACTACGGGATCACAGCACCTATTGATGTCCACTTAATGGTAAAACCGGTTGATCGTATTATTCCTGATTTTGCACAAGCAGGAGCAACCTATATTTCATTTCATGCCGAAGCCAGTGAGCATGTTGATCGCACTATTCAATTAATCAAAGATTGTGGCTGTAAAGCAGGTTTAGTCCTTAATCCTGCCACGCCTCTCAATTATCTCGATTATGTAATGGATAAATTAGATCTTATTCTTCTGATGTCAGTAAACCCTGGCTTCGGTGGTCAATCATTTATACCAAAGACACTCGATAAATTACGTCAAGTTCGCAAGATGATTGATGATGGTGGCTATGACATTCGTTTAGAAATTGATGGCGGTGTCAAAGTTGATAATATTGCCGAAATTGCTCAAGCAGGTGCGGATATGTTTGTTGCTGGCTCTGCTATTTTCAATCAGCCAGATTATAAACAGGTTATCGACAATATGCGCCGAGAATTAGATAAGGTATCGAAATGACAGAAAAAAAACTCAAAGGTATTCGTGCTATCGCTTTTGATCTTGATGGC