Homologs in group_1598

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10430 FBDBKF_10430 95.1 Morganella morganii S1 rpe ribulose-phosphate 3-epimerase
EHELCC_14765 EHELCC_14765 95.1 Morganella morganii S2 rpe ribulose-phosphate 3-epimerase
NLDBIP_14595 NLDBIP_14595 95.1 Morganella morganii S4 rpe ribulose-phosphate 3-epimerase
LHKJJB_14750 LHKJJB_14750 95.1 Morganella morganii S3 rpe ribulose-phosphate 3-epimerase
HKOGLL_13370 HKOGLL_13370 95.1 Morganella morganii S5 rpe ribulose-phosphate 3-epimerase
PMI_RS14990 PMI_RS14990 83.0 Proteus mirabilis HI4320 rpe ribulose-phosphate 3-epimerase

Distribution of the homologs in the orthogroup group_1598

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1598

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG10 9.8e-138 388 84 0 223 3 rpe Ribulose-phosphate 3-epimerase Shigella flexneri
P0AG07 9.8e-138 388 84 0 223 1 rpe Ribulose-phosphate 3-epimerase Escherichia coli (strain K12)
P0AG08 9.8e-138 388 84 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AG09 9.8e-138 388 84 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O157:H7
P45455 4.14e-131 370 86 0 209 3 rpe Ribulose-phosphate 3-epimerase Serratia marcescens
P44756 1.06e-128 365 76 0 224 3 rpe Ribulose-phosphate 3-epimerase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57603 2.67e-110 318 66 0 219 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K940 2.93e-104 303 64 0 209 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P40117 9.8e-99 290 62 3 227 3 rpe1 Ribulose-phosphate 3-epimerase 1 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q04539 1.25e-97 287 62 3 227 3 rpe2 Ribulose-phosphate 3-epimerase 2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q89A59 8.83e-82 246 53 1 226 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O34557 4.79e-75 229 52 2 212 3 rpe Ribulose-phosphate 3-epimerase Bacillus subtilis (strain 168)
P74061 3.1e-71 219 51 2 218 1 rpe Ribulose-phosphate 3-epimerase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9ZTP5 2.52e-69 216 48 2 223 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Oryza sativa subsp. japonica
P51013 9.44e-69 213 51 4 218 3 rpe Ribulose-phosphate 3-epimerase Rhodospirillum rubrum
Q43843 3.62e-67 211 47 2 216 1 None Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) Solanum tuberosum
Q9SAU2 1.86e-65 206 47 2 216 2 RPE Ribulose-5-phosphate-3-epimerase, chloroplastic Arabidopsis thaliana
Q43157 2.1e-65 206 47 2 216 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Spinacia oleracea
O67098 4.22e-58 186 45 3 206 3 rpe Ribulose-phosphate 3-epimerase Aquifex aeolicus (strain VF5)
P9WI51 1.5e-56 182 47 5 221 1 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WI50 1.5e-56 182 47 5 221 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65761 1.5e-56 182 47 5 221 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9CCP9 4.91e-56 181 50 5 201 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium leprae (strain TN)
P51012 2.27e-55 179 46 3 202 3 rpe Ribulose-phosphate 3-epimerase Rhodobacter capsulatus
Q9ZJ75 4.06e-55 178 43 2 212 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain J99 / ATCC 700824)
Q9L0Z5 1.16e-54 177 42 2 219 3 rpe Ribulose-phosphate 3-epimerase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56188 1.58e-54 176 43 2 211 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain ATCC 700392 / 26695)
O14105 2.86e-51 169 41 2 218 3 SPAC31G5.05c Ribulose-phosphate 3-epimerase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q58093 6e-51 168 41 2 212 3 rpe Ribulose-phosphate 3-epimerase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6FL81 3.26e-49 164 38 2 232 3 RPE1 Ribulose-phosphate 3-epimerase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
O66107 5.79e-49 162 43 3 204 3 rpe Ribulose-phosphate 3-epimerase Treponema pallidum (strain Nichols)
Q96AT9 2.12e-48 161 41 2 213 1 RPE Ribulose-phosphate 3-epimerase Homo sapiens
Q5R5Y2 2.52e-48 161 41 2 213 2 RPE Ribulose-phosphate 3-epimerase Pongo abelii
O84123 5.89e-48 160 40 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P46969 7.58e-48 160 38 2 229 1 RPE1 Ribulose-phosphate 3-epimerase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8VEE0 1.25e-47 159 41 2 213 1 Rpe Ribulose-phosphate 3-epimerase Mus musculus
Q9PKR7 1.29e-47 159 40 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia muridarum (strain MoPn / Nigg)
Q9SE42 2.37e-47 159 40 6 219 1 Os09g0505700 Ribulose-phosphate 3-epimerase, cytoplasmic isoform Oryza sativa subsp. japonica
Q755M2 2.79e-45 154 38 4 229 3 RPE1 Ribulose-phosphate 3-epimerase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
Q2QD12 6.94e-45 152 39 2 213 1 RPEL1 Ribulose-phosphate 3-epimerase-like protein 1 Homo sapiens
Q9Z8Z9 5.66e-43 147 38 2 201 3 rpe Ribulose-phosphate 3-epimerase Chlamydia pneumoniae
P32719 7.47e-42 144 37 3 197 1 alsE D-allulose-6-phosphate 3-epimerase Escherichia coli (strain K12)
Q8SRP6 1.13e-26 105 33 7 215 3 RPE1 Ribulose-phosphate 3-epimerase Encephalitozoon cuniculi (strain GB-M1)
P39362 2.9e-23 95 29 2 208 3 sgcE Protein SgcE Escherichia coli (strain K12)
P75522 1.14e-19 86 30 7 203 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47358 3.67e-17 79 31 8 187 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q5PJE1 8.51e-17 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2Y1 1.33e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella typhi
Q8ZKP8 1.85e-16 79 25 3 212 2 lsrE Putative epimerase LsrE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG7 1.85e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HD7 1.85e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella choleraesuis (strain SC-B67)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14125
Feature type CDS
Gene rpe
Product ribulose-phosphate 3-epimerase
Location 38934 - 39608 (strand: 1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1598
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00834 Ribulose-phosphate 3 epimerase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0036 Carbohydrate transport and metabolism (G) G Pentose-5-phosphate-3-epimerase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG046612 ribulose-phosphate 3-epimerase VF0543 Immune modulation

Protein Sequence

MKEFLIAPSILSADFARLGEDTAKVLAAGGDVVHFDVMDNHYVPNLTIGPMVCKALRDYGITAPIDVHLMVKPVDRIVPDFAKAGATYISFHAEASEHVDRTIQLIRECGCKPGLVFNPATPLSYLDYVIDKLDMILLMSVNPGFGGQSFIPETLNKVAEVRRRIDASGRDIRLEVDGGVNTHNIAAIAQAGADMFVAGSAIFSQPDYKTVIDDMRKELTKVSA

Flanking regions ( +/- flanking 50bp)

CGGACAGTGAGCCGTTGAACCCGGCGGCGTCTTATTAAGAGGAAACAGGAATGAAAGAGTTTTTGATTGCTCCGTCCATTTTATCTGCTGACTTTGCCCGCCTGGGGGAAGACACCGCAAAAGTACTCGCTGCGGGCGGCGATGTGGTTCACTTTGATGTTATGGATAACCACTATGTCCCGAACCTGACCATCGGTCCGATGGTGTGTAAGGCCCTGCGTGACTATGGTATTACTGCTCCGATTGACGTGCATCTGATGGTGAAGCCTGTTGATCGTATTGTGCCGGATTTTGCCAAAGCAGGTGCTACCTACATTTCATTCCACGCGGAAGCGAGCGAGCATGTTGATCGCACTATCCAGCTTATCCGCGAATGCGGTTGTAAACCGGGATTGGTTTTCAACCCGGCGACACCGCTCAGCTATCTCGATTATGTTATTGATAAACTGGATATGATCCTGCTGATGTCAGTAAACCCGGGTTTTGGCGGTCAGTCATTTATCCCGGAAACACTGAACAAAGTTGCCGAAGTCCGCCGCCGCATTGATGCCAGCGGGCGTGATATCCGCCTGGAAGTGGATGGCGGTGTGAACACACATAATATTGCCGCGATCGCACAAGCCGGTGCTGATATGTTTGTTGCCGGATCGGCGATTTTCAGTCAGCCGGATTACAAAACCGTTATTGATGATATGCGTAAAGAATTAACAAAGGTTTCAGCATGACAGATAAGACAGCAGTACCGCAATTTACAGGAATTAAAGCCGTTGCATTT