Homologs in group_1598

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10430 FBDBKF_10430 100.0 Morganella morganii S1 rpe ribulose-phosphate 3-epimerase
EHELCC_14765 EHELCC_14765 100.0 Morganella morganii S2 rpe ribulose-phosphate 3-epimerase
LHKJJB_14750 LHKJJB_14750 100.0 Morganella morganii S3 rpe ribulose-phosphate 3-epimerase
HKOGLL_13370 HKOGLL_13370 100.0 Morganella morganii S5 rpe ribulose-phosphate 3-epimerase
F4V73_RS14125 F4V73_RS14125 95.1 Morganella psychrotolerans rpe ribulose-phosphate 3-epimerase
PMI_RS14990 PMI_RS14990 82.1 Proteus mirabilis HI4320 rpe ribulose-phosphate 3-epimerase

Distribution of the homologs in the orthogroup group_1598

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1598

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG10 7.06e-136 383 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Shigella flexneri
P0AG07 7.06e-136 383 82 0 223 1 rpe Ribulose-phosphate 3-epimerase Escherichia coli (strain K12)
P0AG08 7.06e-136 383 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AG09 7.06e-136 383 82 0 223 3 rpe Ribulose-phosphate 3-epimerase Escherichia coli O157:H7
P45455 2.61e-131 371 85 0 209 3 rpe Ribulose-phosphate 3-epimerase Serratia marcescens
P44756 3.48e-131 371 77 0 224 3 rpe Ribulose-phosphate 3-epimerase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57603 7.35e-111 320 66 0 219 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K940 6.72e-107 310 66 0 209 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P40117 3.01e-101 296 62 3 227 3 rpe1 Ribulose-phosphate 3-epimerase 1 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q04539 2.71e-100 293 62 3 227 3 rpe2 Ribulose-phosphate 3-epimerase 2 Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q89A59 9.14e-81 243 53 1 226 3 rpe Ribulose-phosphate 3-epimerase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O34557 1.4e-74 228 52 2 212 3 rpe Ribulose-phosphate 3-epimerase Bacillus subtilis (strain 168)
P74061 2.67e-72 222 52 2 218 1 rpe Ribulose-phosphate 3-epimerase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9ZTP5 2.89e-70 218 49 2 224 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Oryza sativa subsp. japonica
P51013 7.18e-69 213 51 4 218 3 rpe Ribulose-phosphate 3-epimerase Rhodospirillum rubrum
Q43843 1.45e-68 214 48 2 216 1 None Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) Solanum tuberosum
Q9SAU2 5.11e-67 210 48 2 216 2 RPE Ribulose-5-phosphate-3-epimerase, chloroplastic Arabidopsis thaliana
Q43157 6.86e-67 210 48 2 216 1 RPE Ribulose-phosphate 3-epimerase, chloroplastic Spinacia oleracea
O67098 5.42e-61 193 46 3 209 3 rpe Ribulose-phosphate 3-epimerase Aquifex aeolicus (strain VF5)
P9WI51 2.32e-56 181 47 5 221 1 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WI50 2.32e-56 181 47 5 221 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65761 2.32e-56 181 47 5 221 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P51012 3.29e-56 181 46 3 202 3 rpe Ribulose-phosphate 3-epimerase Rhodobacter capsulatus
Q9CCP9 5.71e-56 180 50 5 202 3 rpe Ribulose-phosphate 3-epimerase Mycobacterium leprae (strain TN)
Q9ZJ75 3.16e-54 176 42 2 212 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain J99 / ATCC 700824)
Q9L0Z5 4.7e-54 176 42 2 219 3 rpe Ribulose-phosphate 3-epimerase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56188 1.48e-53 174 42 2 212 3 rpe Ribulose-phosphate 3-epimerase Helicobacter pylori (strain ATCC 700392 / 26695)
Q58093 2.15e-52 172 42 2 212 3 rpe Ribulose-phosphate 3-epimerase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O14105 1.24e-50 167 41 2 218 3 SPAC31G5.05c Ribulose-phosphate 3-epimerase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q6FL81 1.02e-49 165 38 2 232 3 RPE1 Ribulose-phosphate 3-epimerase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
O84123 2.15e-49 164 41 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9SE42 6.11e-49 162 41 6 219 1 Os09g0505700 Ribulose-phosphate 3-epimerase, cytoplasmic isoform Oryza sativa subsp. japonica
Q9PKR7 7.51e-49 162 42 2 203 3 rpe Ribulose-phosphate 3-epimerase Chlamydia muridarum (strain MoPn / Nigg)
O66107 9.12e-49 162 43 1 202 3 rpe Ribulose-phosphate 3-epimerase Treponema pallidum (strain Nichols)
P46969 4.18e-48 160 38 2 229 1 RPE1 Ribulose-phosphate 3-epimerase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q96AT9 4.48e-48 160 40 2 213 1 RPE Ribulose-phosphate 3-epimerase Homo sapiens
Q8VEE0 4.73e-48 160 40 2 213 1 Rpe Ribulose-phosphate 3-epimerase Mus musculus
Q5R5Y2 5.81e-48 160 40 2 213 2 RPE Ribulose-phosphate 3-epimerase Pongo abelii
Q2QD12 1.65e-44 151 38 2 213 1 RPEL1 Ribulose-phosphate 3-epimerase-like protein 1 Homo sapiens
Q755M2 3.56e-44 150 37 4 229 3 RPE1 Ribulose-phosphate 3-epimerase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
Q9Z8Z9 2.23e-42 145 38 2 201 3 rpe Ribulose-phosphate 3-epimerase Chlamydia pneumoniae
P32719 1.02e-39 139 35 4 216 1 alsE D-allulose-6-phosphate 3-epimerase Escherichia coli (strain K12)
Q8SRP6 8.06e-28 108 33 5 214 3 RPE1 Ribulose-phosphate 3-epimerase Encephalitozoon cuniculi (strain GB-M1)
P39362 3.16e-23 95 29 2 208 3 sgcE Protein SgcE Escherichia coli (strain K12)
P75522 3.47e-20 88 30 7 203 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q5PJE1 8e-17 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P47358 1e-16 78 32 7 180 3 rpe Ribulose-phosphate 3-epimerase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q8Z2Y1 1.22e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella typhi
Q8ZKP8 1.89e-16 79 25 3 212 2 lsrE Putative epimerase LsrE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG7 1.89e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HD7 1.89e-16 79 25 3 212 3 lsrE Putative epimerase LsrE Salmonella choleraesuis (strain SC-B67)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14595
Feature type CDS
Gene rpe
Product ribulose-phosphate 3-epimerase
Location 42190 - 42864 (strand: 1)
Length 675 (nucleotides) / 224 (amino acids)

Contig

Accession ZDB_530
Length 141725 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1598
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00834 Ribulose-phosphate 3 epimerase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0036 Carbohydrate transport and metabolism (G) G Pentose-5-phosphate-3-epimerase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG046612 ribulose-phosphate 3-epimerase VF0543 Immune modulation

Protein Sequence

MKEFLIAPSILSADFARLGEDTAKVLAAGGDVVHFDVMDNHYVPNLTIGPMVCKALRDYGITAPIDVHLMVKPVDSIVPDFAKAGATYISFHAEASEHVDRTIQLIRECGCKPGLVFNPATPLSYLDYVIDKLDLILLMSVNPGFGGQSFIPETLKKVEEVRRRIDASGRDIRLEVDGGIKTENIAAVAQAGADMFVAGSAIFGKPDYKAVIDDMRKELTKVSA

Flanking regions ( +/- flanking 50bp)

CGGACAGTAAGCCGTTGAACCCGGCGGCGTCTTATTAAGAGGAAACAGGAATGAAAGAGTTTTTGATTGCTCCGTCCATTTTATCTGCTGACTTTGCCCGTCTGGGGGAAGACACCGCGAAAGTTCTCGCCGCAGGCGGCGATGTGGTTCACTTCGACGTGATGGATAACCATTATGTCCCGAACCTGACTATCGGACCGATGGTGTGCAAGGCGCTGCGTGATTACGGTATTACCGCGCCGATTGATGTGCATCTGATGGTAAAACCGGTGGACAGCATTGTGCCGGACTTCGCCAAAGCGGGCGCAACCTACATTTCATTCCACGCGGAAGCGAGCGAGCACGTTGATCGCACCATTCAGCTTATCCGCGAATGCGGCTGTAAACCGGGCCTGGTATTCAACCCGGCCACGCCGCTCAGTTACCTCGATTATGTGATTGATAAACTGGATTTGATCCTGCTGATGTCGGTAAACCCGGGCTTCGGTGGTCAGTCCTTTATTCCGGAAACACTGAAAAAAGTGGAAGAAGTCCGCCGCCGCATTGATGCCAGCGGTCGTGACATCCGCCTGGAAGTCGATGGCGGAATTAAGACTGAAAATATCGCGGCAGTGGCGCAGGCCGGTGCGGATATGTTTGTGGCCGGCTCTGCGATTTTCGGCAAACCGGACTACAAAGCCGTGATTGATGATATGCGTAAAGAATTAACAAAGGTTTCAGCATGACAGACAAAACAGCAGTACAGCAATTCACAGGGATTAAAGCCGTCGCATTT