COG0036


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0036, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Pentose-5-phosphate-3-epimerase
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG0036 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1598 FBDBKF_10430 42200 42874 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S1
1 group_2919 FBDBKF_13780 50126 50968 1 hisF Imidazole glycerol phosphate synthase subunit HisF Morganella morganii S1
2 group_2919 EHELCC_11450 135002 135844 1 hisF Imidazole glycerol phosphate synthase subunit HisF Morganella morganii S2
3 group_1598 EHELCC_14765 42190 42864 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S2
4 group_2919 NLDBIP_11795 135002 135844 1 hisF Imidazole glycerol phosphate synthase subunit HisF Morganella morganii S4
5 group_1598 NLDBIP_14595 42190 42864 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S4
6 group_2919 LHKJJB_11655 135002 135844 1 hisF Imidazole glycerol phosphate synthase subunit HisF Morganella morganii S3
7 group_1598 LHKJJB_14750 98862 99536 -1 rpe ribulose-phosphate 3-epimerase Morganella morganii S3
8 group_2919 HKOGLL_10265 135002 135844 1 hisF Imidazole glycerol phosphate synthase subunit HisF Morganella morganii S5
9 group_1598 HKOGLL_13370 98862 99536 -1 rpe ribulose-phosphate 3-epimerase Morganella morganii S5
10 group_1598 F4V73_RS14125 38934 39608 1 rpe ribulose-phosphate 3-epimerase Morganella psychrotolerans
11 group_1598 PMI_RS14990 3327016 3327690 1 rpe ribulose-phosphate 3-epimerase Proteus mirabilis HI4320