Homologs in group_2415

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19505 FBDBKF_19505 77.2 Morganella morganii S1 metH methionine synthase
EHELCC_16450 EHELCC_16450 77.2 Morganella morganii S2 metH methionine synthase
NLDBIP_16660 NLDBIP_16660 77.2 Morganella morganii S4 metH methionine synthase
LHKJJB_16810 LHKJJB_16810 77.2 Morganella morganii S3 metH methionine synthase
HKOGLL_18805 HKOGLL_18805 77.2 Morganella morganii S5 metH methionine synthase
F4V73_RS18620 F4V73_RS18620 76.7 Morganella psychrotolerans metH methionine synthase

Distribution of the homologs in the orthogroup group_2415

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2415

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37586 0.0 1996 78 1 1220 3 metH Methionine synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P13009 0.0 1995 78 1 1220 1 metH Methionine synthase Escherichia coli (strain K12)
Q9KUW9 0.0 1826 71 3 1221 3 metH Methionine synthase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8DCJ7 0.0 1810 70 2 1220 3 metH Methionine synthase Vibrio vulnificus (strain CMCP6)
Q87L95 0.0 1806 70 3 1221 3 metH Methionine synthase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q7MHB1 0.0 1803 70 2 1220 3 metH Methionine synthase Vibrio vulnificus (strain YJ016)
Q5E814 0.0 1795 69 3 1221 3 metH Methionine synthase Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9AJQ8 0.0 1791 69 3 1221 3 metH Methionine synthase Aliivibrio fischeri
Q9I2Q2 0.0 1633 65 7 1224 3 metH Methionine synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q54P92 0.0 1398 54 8 1242 3 mtr Methionine synthase Dictyostelium discoideum
Q4JIJ3 0.0 1320 53 13 1252 2 MTR Methionine synthase Bos taurus
Q9Z2Q4 0.0 1309 53 15 1253 1 Mtr Methionine synthase Rattus norvegicus
A6H5Y3 0.0 1301 53 15 1252 1 Mtr Methionine synthase Mus musculus
Q99707 0.0 1298 53 13 1251 1 MTR Methionine synthase Homo sapiens
Q09582 0.0 1263 51 15 1247 3 metr-1 Probable methionine synthase Caenorhabditis elegans
A8XY95 0.0 1252 51 16 1273 3 metr-1 Probable methionine synthase Caenorhabditis briggsae
O33465 0.0 877 70 0 599 3 metH Methionine synthase (Fragment) Pseudomonas putida
Q57195 0.0 640 54 8 588 3 HI_1042 Uncharacterized protein HI_1042 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q57195 2.11e-08 62 71 0 38 3 HI_1042 Uncharacterized protein HI_1042 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O33259 8.94e-174 548 31 32 1239 1 metH Methionine synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q55786 1.43e-171 543 30 24 1227 3 metH Methionine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q49775 6.74e-169 536 30 34 1246 3 metH Methionine synthase Mycobacterium leprae (strain TN)
O06745 6.66e-32 136 30 10 333 2 yitJ Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase Bacillus subtilis (strain 168)
Q24SP8 2.69e-25 108 34 3 182 3 DSY3155 Corrinoid protein DSY3155 Desulfitobacterium hafniense (strain Y51)
P58980 1.17e-24 106 38 5 193 3 mtbC2 Dimethylamine corrinoid protein 2 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q8TS71 1.34e-24 106 36 6 219 3 mtbC2 Dimethylamine corrinoid protein 2 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q8TTB0 1.65e-24 106 38 4 186 3 mtbC1 Dimethylamine corrinoid protein 1 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q8TN69 2.4e-24 105 36 5 201 3 mtbC3 Dimethylamine corrinoid protein 3 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P58979 5.92e-24 104 37 5 193 3 mtbC1 Dimethylamine corrinoid protein 1 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
O93657 2.02e-23 103 37 4 186 1 mtbC Dimethylamine corrinoid protein Methanosarcina barkeri
Q8TS74 1.13e-22 101 31 3 178 3 mttC2 Trimethylamine corrinoid protein 2 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
O93659 9.64e-21 95 29 2 175 1 mttC Trimethylamine corrinoid protein Methanosarcina barkeri
Q46EH4 1.8e-20 95 32 1 174 1 mtaC Methanol--corrinoid protein Methanosarcina barkeri (strain Fusaro / DSM 804)
P58981 2.48e-20 92 37 4 174 3 mtbC3 Dimethylamine corrinoid protein 3 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q8TTA8 3.46e-20 94 30 1 153 3 mttC1 Trimethylamine corrinoid protein 1 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P58982 4.98e-20 93 30 1 153 3 mttC1 Trimethylamine corrinoid protein 1 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
P0DX07 1.43e-19 92 34 1 140 1 mtqC Quaternary-amine-specific corrinoid protein Eubacterium limosum
P58868 4.14e-19 90 31 4 187 3 mtmC2 Monomethylamine corrinoid protein 2 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P58983 4.53e-19 90 28 1 153 3 mttC2 Trimethylamine corrinoid protein 2 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q9P9L5 1.18e-17 86 33 5 168 3 mtmC2 Monomethylamine corrinoid protein 2 Methanosarcina barkeri
O30641 1.85e-17 85 33 5 169 1 mtmC1 Monomethylamine corrinoid protein 1 Methanosarcina barkeri
Q9SDL7 5.17e-16 84 25 11 288 1 HMT-1 Homocysteine S-methyltransferase 1 Arabidopsis thaliana
P58978 6.63e-16 81 29 5 188 3 mtmC2 Monomethylamine corrinoid protein 2 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
A4ZGQ8 7.14e-16 84 26 13 289 1 HMT1 Homocysteine S-methyltransferase 1 Brassica oleracea var. italica
P58977 9.88e-16 80 32 5 158 3 mtmC1 Monomethylamine corrinoid protein 1 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
P58867 2.69e-15 79 33 5 158 3 mtmC1 Monomethylamine corrinoid protein 1 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Q9FUN0 2.43e-13 76 26 12 293 2 HMT-1 Homocysteine S-methyltransferase 1 Zea mays
Q48925 6.41e-13 73 26 3 196 3 mtsB Methylated-thiol--corrinoid protein MtsB Methanosarcina barkeri
Q9FUM7 7.29e-13 75 25 14 329 2 HMT-4 Homocysteine S-methyltransferase 4 Zea mays
Q8LAX0 9.09e-13 74 24 9 289 1 HMT3 Homocysteine S-methyltransferase 3 Arabidopsis thaliana
Q8PUA7 6.6e-12 71 24 4 204 3 mtsB Methylated-thiol--corrinoid protein MtsB Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
P56707 1.49e-11 70 24 14 341 1 SMTA Selenocysteine methyltransferase Astragalus bisulcatus
Q9M1W4 4.63e-11 69 24 10 291 1 HMT-2 Homocysteine S-methyltransferase 2 Arabidopsis thaliana
Q9FUM9 6.93e-11 68 26 11 295 2 HMT-2 Homocysteine S-methyltransferase 2 Zea mays
Q9FUM8 1.19e-10 68 24 10 301 2 HMT-3 Homocysteine S-methyltransferase 3 Zea mays
Q46389 1.37e-10 67 25 9 269 1 acsE 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase Moorella thermoacetica
O31463 3.65e-10 66 25 15 324 4 ybgG Homocysteine S-methyltransferase YbgG Bacillus subtilis (strain 168)
Q4VNK0 2.02e-09 64 23 9 293 1 SMT Selenocysteine Se-methyltransferase Brassica oleracea var. italica
Q47690 8.77e-09 62 23 11 317 1 mmuM Homocysteine S-methyltransferase Escherichia coli (strain K12)
P0DX08 2.57e-07 57 23 9 248 1 mtqA Methylcorrinoid:tetrahydrofolate methyltransferase Eubacterium limosum
Q68FT5 2.63e-06 54 23 11 288 2 Bhmt2 S-methylmethionine--homocysteine S-methyltransferase BHMT2 Rattus norvegicus
O09171 5.99e-06 53 23 12 292 1 Bhmt Betaine--homocysteine S-methyltransferase 1 Rattus norvegicus
Q5XGM3 1.48e-05 52 24 11 292 2 bhmt Betaine--homocysteine S-methyltransferase 1 Xenopus laevis
O35490 3.1e-05 51 22 10 291 1 Bhmt Betaine--homocysteine S-methyltransferase 1 Mus musculus
Q5M8Z0 5.44e-05 50 24 11 292 2 bhmt Betaine--homocysteine S-methyltransferase 1 Xenopus tropicalis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13595
Feature type CDS
Gene metH
Product methionine synthase
Location 3016297 - 3019968 (strand: -1)
Length 3672 (nucleotides) / 1223 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2415
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00809 Pterin binding enzyme
PF02310 B12 binding domain
PF02574 Homocysteine S-methyltransferase
PF02607 B12 binding domain
PF02965 Vitamin B12 dependent methionine synthase, activation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1410 Amino acid transport and metabolism (E) E Methionine synthase I, cobalamin-binding domain

Kegg Ortholog Annotation(s)

Protein Sequence

MITQQLTQALAKRILVLDGAMGTMIQQYQLAEEDYRGERFAHWQCDVKGNNDLLVLTQPQIITEIHNAYFEAGADIVETNTFNATSIAMADYQMEGLCAELNEEAAKLARACADKWSALTPDKPRYVAGVLGPTNRTASISPDVNDPAFRNISFDTLVMAYREAICGLIKGGVDLIMVETIFDTLNAKAAIFAIKCEFDNLNIELPVMISGTITDASGRTLTGQTTEAFYHSLRHADALSFGLNCALGPKELRQYIQTLSQISETYVSAHPNAGLPNAFGGYDLDANEMAEQIKEWAQAGFLNIVGGCCGTTPAHIQAIAQAVDGIAPRTLPVIKKACRLSGLEPLVIDDNSLFVNVGERTNVTGSAKFKRLIKEGNYQEALDVARQQVENGAQIIDINMDEGMLDAIEAMTRFLNLIAGEPDIAKVPIMIDSSKWQVIEEGLKCIQGKGIVNSISMKEGEALFIEHAKLVRKYGAAVVVMAFDEIGQADTRERKIKICRRAYYLLTEKAGFPPEDIIFDPNIFAVATGIAEHNNYAVDFIEVCADIKSQLPYALISGGVSNVSFSFRGNDPVREAIHSVFLYYAVKNGMDMGIVNAGQLAIYDSLPDELRNAVEDVILNRHAESTDNLLALAERYRGTKSEEQHSTLAQWRQWEVEKRLEYALVKGITEFIIEDTEACRQQASSPIEVIEGPLMNGMNTVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPYIQATKKAGSSAGKVLLATVKGDVHDIGKNIVGVVLQCNNYEIIDLGVMVPCDKILQTAIDENVDIIGLSGLITPSLDEMVNVAKEMERRGFSLPLMIGGATTSKAHTAVKIEPNYSHPTVYVQNASRTVGVVAALLSATQKADFVAKTRHEYEVVRQQYARKKPRTPPVSLATARANALQLDWQHYTPPKPNQLGVQQVTANIETLRKYIDWTPFFMTWSLAGKYPRILEDEVVGEEARRVFADANAMLDKLSREKLLTPKGIVGLFPANRLGDDIIIYQDETRQHELLRCCHLRQQTEKKEYPNYCLADFIAPVDSGLADYFGAFAVTGGLEEDALANGYDNAHDDYNKIMVKALSDRLAEAFAEYLHQQVRTKIWGYSPDEALSNDELIREKYQGTRPAPGYPACPEHTEKAKIWQLLNVENRIGMKLTDAYAMWPGASVSGWYFSHPESKYFAVAQIQKDQVEDYAKRRGMSISEVERWLAPNLGYEP

Flanking regions ( +/- flanking 50bp)

ACGAAAATAACAACAACACAATATTCTTTGGTAGAGGAAGCAATGTGACCATGATAACTCAGCAGCTTACGCAAGCATTAGCCAAACGTATCTTAGTCCTTGATGGCGCAATGGGAACCATGATCCAGCAATATCAGCTGGCAGAAGAAGATTACCGAGGTGAACGTTTTGCCCATTGGCAATGTGATGTTAAAGGGAATAATGACCTTTTAGTCTTGACGCAGCCGCAGATCATTACTGAAATTCATAATGCTTATTTTGAAGCCGGTGCAGATATCGTGGAAACAAACACCTTTAATGCAACCTCTATTGCCATGGCTGATTATCAGATGGAAGGGTTATGTGCAGAATTGAATGAAGAGGCTGCTAAACTTGCCAGAGCCTGTGCTGATAAATGGAGTGCATTAACGCCAGATAAACCACGTTATGTTGCAGGGGTATTAGGGCCAACCAATAGAACAGCATCCATTTCTCCGGATGTTAACGATCCCGCGTTTCGTAATATCTCATTTGATACATTGGTGATGGCTTATCGAGAGGCGATCTGCGGACTCATTAAAGGAGGGGTGGATTTAATTATGGTGGAAACCATTTTTGACACCCTAAATGCTAAAGCGGCTATTTTTGCGATTAAATGTGAGTTTGATAATCTTAATATTGAATTACCGGTGATGATCTCAGGGACTATCACTGATGCGTCAGGTAGAACATTAACAGGGCAAACCACAGAAGCCTTTTATCACTCACTACGTCATGCCGACGCGTTATCATTTGGTTTAAATTGTGCGCTAGGGCCAAAAGAATTACGCCAATATATTCAAACTCTCTCCCAAATATCAGAAACTTATGTCAGTGCTCACCCTAATGCTGGCTTACCTAATGCCTTTGGCGGATATGATTTAGATGCCAATGAGATGGCGGAACAAATCAAGGAGTGGGCGCAAGCTGGGTTTCTTAATATTGTCGGTGGTTGTTGTGGCACAACCCCTGCCCATATTCAGGCTATTGCTCAAGCGGTTGATGGCATAGCACCTAGAACATTACCTGTCATTAAAAAAGCCTGTCGACTCTCAGGTCTTGAGCCTTTGGTCATTGATGATAATTCGCTGTTCGTCAATGTGGGGGAACGAACGAATGTGACAGGTTCGGCTAAATTTAAACGTTTAATAAAAGAAGGTAATTACCAAGAAGCCCTTGATGTTGCTCGTCAGCAAGTTGAAAACGGTGCTCAAATCATCGATATCAATATGGATGAAGGCATGTTAGATGCGATAGAAGCAATGACACGTTTTCTTAATCTTATTGCGGGTGAACCCGATATTGCCAAAGTCCCGATTATGATTGATTCGTCAAAATGGCAAGTCATTGAGGAAGGATTGAAATGTATTCAGGGTAAGGGAATAGTCAATTCGATTTCGATGAAAGAAGGGGAAGCCCTTTTTATTGAGCATGCAAAATTAGTTCGTAAGTATGGTGCTGCGGTTGTCGTGATGGCGTTTGATGAAATAGGGCAAGCAGATACTCGAGAGCGAAAAATAAAAATTTGTCGGCGTGCGTATTATCTATTAACTGAAAAAGCTGGATTTCCACCAGAAGATATTATTTTTGATCCCAATATTTTTGCTGTAGCAACGGGTATTGCTGAACATAATAATTATGCAGTTGATTTTATAGAAGTTTGTGCGGATATTAAATCTCAACTGCCTTATGCTTTAATTTCTGGCGGTGTTTCTAATGTGTCATTCTCTTTTCGGGGCAATGATCCCGTTCGGGAAGCTATCCACTCCGTTTTTCTCTATTACGCTGTAAAAAATGGTATGGATATGGGGATTGTCAATGCTGGGCAGCTCGCTATTTATGACTCATTACCGGATGAACTACGTAATGCGGTAGAGGATGTTATTTTAAATCGCCATGCAGAGAGTACTGATAATTTACTGGCACTCGCAGAGCGTTATCGTGGTACTAAAAGTGAGGAACAGCACTCTACGCTTGCGCAATGGCGACAATGGGAGGTCGAAAAGCGCCTAGAGTACGCGTTAGTGAAAGGGATCACCGAATTTATCATTGAAGATACCGAAGCGTGCCGCCAACAAGCTTCGAGTCCTATCGAAGTGATAGAAGGGCCATTAATGAATGGCATGAACACAGTGGGCGATCTGTTTGGTGAAGGTAAAATGTTTTTACCCCAAGTAGTAAAATCGGCACGGGTGATGAAACAGGCCGTAGCTTACCTTGAACCTTATATTCAAGCGACAAAAAAAGCAGGCAGCTCGGCAGGAAAAGTGTTACTGGCGACAGTAAAGGGAGATGTCCACGACATTGGCAAAAATATTGTCGGAGTGGTGTTGCAATGTAATAACTATGAAATTATCGATCTGGGGGTCATGGTACCTTGCGATAAAATCTTGCAAACAGCCATTGACGAAAATGTTGATATTATTGGATTGTCTGGATTGATCACTCCATCACTGGATGAGATGGTGAATGTTGCTAAGGAGATGGAAAGACGCGGTTTTTCTCTTCCTTTAATGATTGGTGGTGCGACAACATCGAAAGCGCACACGGCAGTAAAAATTGAACCTAATTACAGCCACCCAACCGTTTATGTGCAGAATGCGTCAAGAACGGTCGGGGTGGTCGCTGCATTATTATCGGCCACACAAAAGGCTGATTTTGTCGCTAAAACACGCCATGAATATGAAGTGGTACGTCAGCAGTATGCGAGAAAAAAACCGCGTACGCCTCCCGTTTCCTTAGCGACAGCTCGTGCCAATGCATTGCAGCTTGACTGGCAACACTATACGCCACCTAAGCCGAACCAATTAGGGGTACAACAAGTTACAGCCAATATTGAAACTTTACGTAAGTATATCGACTGGACACCTTTCTTTATGACTTGGTCATTGGCGGGGAAATATCCACGTATATTAGAAGATGAGGTTGTCGGAGAAGAGGCAAGACGCGTTTTTGCAGATGCGAATGCCATGTTGGATAAACTCAGTCGTGAAAAATTACTGACTCCGAAAGGTATCGTTGGTTTATTCCCTGCTAATCGCCTTGGTGATGACATTATTATTTACCAAGATGAAACGCGACAGCATGAGCTATTACGTTGTTGTCATTTACGCCAACAAACAGAAAAAAAAGAGTACCCTAACTATTGCTTAGCAGACTTTATTGCCCCTGTGGATAGTGGTCTTGCTGACTATTTTGGTGCTTTTGCAGTTACCGGCGGTCTAGAAGAAGATGCACTCGCTAATGGGTATGATAATGCTCATGATGATTACAATAAAATTATGGTAAAAGCGCTATCCGATCGTCTTGCAGAAGCTTTTGCCGAATATTTGCATCAACAAGTGAGAACCAAGATTTGGGGTTACAGTCCTGACGAAGCGCTCTCTAATGACGAGTTGATTAGAGAAAAATATCAAGGAACACGACCTGCACCGGGATATCCAGCTTGCCCAGAGCACACAGAAAAAGCAAAAATTTGGCAACTGTTAAATGTAGAAAATCGCATTGGTATGAAGCTTACTGATGCTTATGCGATGTGGCCGGGGGCTTCGGTATCGGGTTGGTATTTTAGTCATCCTGAAAGTAAATATTTTGCCGTCGCTCAAATTCAAAAAGATCAGGTAGAAGATTACGCCAAACGTCGTGGTATGAGTATAAGTGAAGTGGAACGTTGGTTAGCCCCTAATTTAGGCTATGAGCCTTAATTAAACGGTATCTGAAGATTATAATAATGTAATAAATAACAAGGTGATAA