VFG042617


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG042617, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein fimbrial biogenesis outer membrane usher protein
VF ID VF1235
Category Adherence
Protein ID WP_012367649
Vf_category_id VFC0001

Occurence in the database

VFG042617 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3024 FBDBKF_17975 34592 34810 -1 fimD Outer membrane usher protein FimD/PapC Morganella morganii S1
1 group_3024 EHELCC_06360 1566 1784 1 fimD Outer membrane usher protein FimD/PapC Morganella morganii S2
2 group_3024 NLDBIP_06680 1439 1657 1 fimD Outer membrane usher protein FimD/PapC Morganella morganii S4
3 group_3024 LHKJJB_19280 1350 1568 1 fimD Outer membrane usher protein FimD/PapC Morganella morganii S3
4 group_3024 HKOGLL_04710 267984 268202 -1 fimD Outer membrane usher protein FimD/PapC Morganella morganii S5
5 group_136 PMI_RS02640 576156 578690 -1 fimbria/pilus outer membrane usher protein Proteus mirabilis HI4320
6 group_3024 PMI_RS19090 2868243 2868446 -1 FimD/PapC N-terminal domain-containing protein Proteus mirabilis HI4320