Homologs in group_73

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08980 FBDBKF_08980 54.8 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
FBDBKF_09030 FBDBKF_09030 72.2 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_10380 EHELCC_10380 72.2 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
EHELCC_10430 EHELCC_10430 54.8 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10725 NLDBIP_10725 72.2 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
NLDBIP_10775 NLDBIP_10775 54.8 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10580 LHKJJB_10580 54.8 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
LHKJJB_10630 LHKJJB_10630 72.2 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13640 HKOGLL_13640 54.8 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
HKOGLL_13690 HKOGLL_13690 72.2 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD
F4V73_RS10940 F4V73_RS10940 71.2 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone
F4V73_RS10985 F4V73_RS10985 55.2 Morganella psychrotolerans - fimbria/pilus periplasmic chaperone

Distribution of the homologs in the orthogroup group_73

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_73

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15319 9.43e-85 255 52 6 246 1 papD Chaperone protein PapD Escherichia coli
P77599 7.74e-82 248 53 2 217 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P53520 1.58e-73 227 44 3 234 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P75749 1.15e-54 179 39 5 239 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 8.14e-44 151 34 7 250 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P42914 1.42e-34 127 34 8 230 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P21646 2.84e-33 123 34 10 236 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
Q8X5K6 5.95e-32 120 32 8 240 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P33409 5e-31 118 32 9 239 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P43661 6.79e-31 117 30 7 236 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33128 2.49e-30 116 33 9 243 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P37923 1.4e-29 114 35 8 231 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42183 1.68e-29 110 47 4 119 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P59590 2.47e-27 108 31 9 232 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 6.25e-27 107 31 9 232 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P62609 2.21e-26 105 30 7 215 1 focC Chaperone protein FocC Escherichia coli
P62610 2.21e-26 105 30 7 215 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45991 4.54e-25 102 28 7 239 3 hifB Chaperone protein HifB Haemophilus influenzae
P75856 1.96e-24 100 31 8 215 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 2.09e-24 100 30 9 230 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P35757 7.35e-24 99 28 7 239 3 hifB Chaperone protein HifB Haemophilus influenzae
P33342 6e-23 96 29 8 214 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P25402 1.11e-21 93 29 11 231 3 fanE Chaperone protein FanE Escherichia coli
P77249 2.08e-21 92 28 8 233 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P25401 6.4e-21 91 30 5 171 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 6.99e-20 89 29 5 171 3 clpE Chaperone protein ClpE Escherichia coli
P69966 1.81e-15 77 29 7 176 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 1.81e-15 77 29 7 176 3 psaB Chaperone protein PsaB Yersinia pestis
P53516 3.72e-13 70 27 8 201 3 afaB Chaperone protein AfaB Escherichia coli
P26926 5.7e-12 67 25 9 224 1 caf1M Chaperone protein caf1M Yersinia pestis
P46004 4.1e-11 64 26 8 221 3 aggD Chaperone protein AggD Escherichia coli
P40876 8.71e-11 63 25 7 217 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P46738 1.06e-10 63 27 8 201 3 nfaE Chaperone protein NfaE Escherichia coli
P33387 1.2e-09 60 25 5 171 3 sefB Chaperone protein SefB Salmonella enteritidis
P33407 1.78e-09 60 24 12 241 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P53518 3.37e-08 56 24 9 233 3 cssC Chaperone protein CssC Escherichia coli
P53519 5.94e-08 55 23 9 242 3 cssC Chaperone protein CssC Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01290
Feature type CDS
Gene mrpD
Product MR/P fimbria assembly chaperone MrpD
Location 315213 - 315971 (strand: 1)
Length 759 (nucleotides) / 252 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_73
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042624 MR/P fimbria assembly chaperone MrpD VF1233 Adherence

Protein Sequence

MMLLKRSCIVATTLLMGMAFTHQAVAAIALDRTRVIFNGAEKSISLNVSNQNKDLPYLAQGWMENENGERIESPLIVLPPIQRIEPGDKSQIKVQSLPDIAKLPQDRESVFYFNLREIPPRSNKPNVLQIALQTRIKLFYRPASIYASQTDLTNPWQEQITLTKKGDRFEVNNPTPYYVTLVDGLTSLKGKSLDGFEPLMIAPKSSGTINLSASMFGASPVLSYINDYGGRPQMKFTCSGNQCKVTETAAGN

Flanking regions ( +/- flanking 50bp)

AGGAACAGGAAATAAAGATAAAAACAACTTCAGACAAAGAGTAATTAAAGATGATGTTATTAAAACGCTCATGCATTGTTGCAACCACTTTGTTAATGGGAATGGCATTTACTCATCAAGCTGTTGCTGCCATTGCGCTAGATCGAACTCGTGTCATTTTTAATGGTGCCGAAAAATCGATTAGTTTAAATGTCAGCAATCAAAATAAGGACTTGCCTTATCTTGCTCAAGGCTGGATGGAAAATGAAAACGGCGAACGTATTGAAAGCCCACTGATTGTTTTACCCCCGATCCAACGTATTGAACCGGGTGATAAAAGTCAGATTAAGGTGCAATCATTACCTGATATAGCCAAATTACCACAAGATAGAGAAAGTGTTTTCTATTTTAACCTACGTGAAATTCCACCACGTAGTAATAAGCCTAATGTACTGCAAATTGCATTACAAACGCGGATCAAATTATTTTATCGTCCTGCATCAATCTATGCCTCGCAAACGGATTTAACCAATCCTTGGCAAGAGCAGATCACTTTAACTAAAAAAGGTGATCGCTTCGAAGTGAATAATCCAACGCCTTACTATGTGACATTAGTCGATGGATTAACCAGTTTGAAAGGAAAAAGCTTGGATGGCTTTGAACCATTAATGATCGCACCTAAAAGTAGCGGCACGATAAATCTGAGTGCTTCCATGTTTGGTGCTTCACCGGTATTGAGCTACATCAATGATTATGGCGGTCGCCCTCAGATGAAATTCACCTGTAGTGGCAATCAATGCAAAGTAACAGAAACGGCAGCTGGAAACTAAATAGGTCTGATTTATGGTTATGGAACAGTGGTTTAGCCCAAGCAAGGCAG