VFG042624


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG042624, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein MR/P fimbria assembly chaperone MrpD
VF ID VF1233
Category Adherence
Protein ID WP_004244924
Vf_category_id VFC0001

Occurence in the database

VFG042624 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_73 FBDBKF_09030 19854 20612 -1 fimC P pilus assembly protein, chaperone PapD Morganella morganii S1
1 group_73 EHELCC_10380 125492 126250 1 fimC P pilus assembly protein, chaperone PapD Morganella morganii S2
2 group_73 NLDBIP_10725 103763 104521 1 fimC P pilus assembly protein, chaperone PapD Morganella morganii S4
3 group_73 LHKJJB_10630 87007 87765 -1 fimC P pilus assembly protein, chaperone PapD Morganella morganii S3
4 group_73 HKOGLL_13690 20308 21066 -1 fimC P pilus assembly protein, chaperone PapD Morganella morganii S5
5 group_73 F4V73_RS10940 330749 331501 1 fimbria/pilus periplasmic chaperone Morganella psychrotolerans
6 group_73 PMI_RS01290 315213 315971 1 mrpD MR/P fimbria assembly chaperone MrpD Proteus mirabilis HI4320