Homologs in group_30

Help

13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07255 FBDBKF_07255 29.4 Morganella morganii S1 ompC Porin OmpC
FBDBKF_09060 FBDBKF_09060 32.4 Morganella morganii S1 ompC Outer membrane porin OmpC/OmpF/PhoE
EHELCC_03715 EHELCC_03715 29.4 Morganella morganii S2 ompC Porin OmpC
EHELCC_10350 EHELCC_10350 32.4 Morganella morganii S2 ompC Outer membrane porin OmpC/OmpF/PhoE
NLDBIP_03715 NLDBIP_03715 29.4 Morganella morganii S4 ompC Porin OmpC
NLDBIP_10695 NLDBIP_10695 32.4 Morganella morganii S4 ompC Outer membrane porin OmpC/OmpF/PhoE
LHKJJB_09545 LHKJJB_09545 29.4 Morganella morganii S3 ompC Porin OmpC
LHKJJB_10660 LHKJJB_10660 32.4 Morganella morganii S3 ompC Outer membrane porin OmpC/OmpF/PhoE
HKOGLL_09430 HKOGLL_09430 29.4 Morganella morganii S5 ompC Porin OmpC
HKOGLL_13720 HKOGLL_13720 32.4 Morganella morganii S5 ompC Outer membrane porin OmpC/OmpF/PhoE
F4V73_RS01440 F4V73_RS01440 31.4 Morganella psychrotolerans - porin
F4V73_RS10885 F4V73_RS10885 32.2 Morganella psychrotolerans - porin
PMI_RS03760 PMI_RS03760 31.3 Proteus mirabilis HI4320 - porin

Distribution of the homologs in the orthogroup group_30

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_30

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9CNN9 2.05e-10 65 27 10 275 3 ompH Major outer membrane protein Pasteurella multocida (strain Pm70)
A0A1J0CL75 2.12e-08 59 30 4 131 1 None Outer membrane porin F Proteus mirabilis
J9RX10 2.84e-07 55 30 3 121 2 yedS Outer membrane protein YedS Escherichia coli
Q56828 3.03e-07 55 25 1 116 3 ompF Outer membrane porin F Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6)
O54339 3.2e-07 55 23 9 278 3 ompH Major outer membrane protein Pasteurella multocida
A0A2S4MYF8 1.11e-06 53 26 14 323 1 ompC Outer membrane protein C Shigella flexneri
A0A4P7TKC8 1.11e-06 53 26 14 323 1 ompC1 Outer membrane porin C 1 Shigella flexneri serotype 5a (strain M90T)
Q8XE41 1.19e-06 53 29 3 119 3 ompC Outer membrane porin C Escherichia coli O157:H7
O54340 2.36e-06 52 23 10 273 3 ompH Major outer membrane protein Pasteurella multocida
P37592 2.77e-06 52 29 3 122 1 ompD Outer membrane porin protein OmpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D0ZXQ1 2.77e-06 52 29 3 122 1 ompD Outer membrane porin protein OmpD Salmonella typhimurium (strain 14028s / SGSC 2262)
Q5PHY0 2.77e-06 52 29 3 122 3 ompD Outer membrane porin protein OmpD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57P83 2.77e-06 52 29 3 122 3 ompD Outer membrane porin protein OmpD Salmonella choleraesuis (strain SC-B67)
P06996 2.81e-06 52 28 3 119 1 ompC Outer membrane porin C Escherichia coli (strain K12)
Q8CVW1 3.88e-06 52 28 2 119 1 ompC Outer membrane porin C Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0DQH0 3.95e-06 52 28 2 119 1 ompC Outer membrane porin C Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P21420 7.24e-06 51 28 5 130 5 nmpC Putative outer membrane porin protein NmpC Escherichia coli (strain K12)
A8AGM8 2.23e-05 49 27 3 122 3 ompD Outer membrane porin protein OmpD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P0DSD9 2.68e-05 49 26 2 126 1 ompF Outer membrane porin F Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A0A4P7TN82 2.73e-05 49 26 2 126 1 ompF Outer membrane porin F Shigella flexneri serotype 5a (strain M90T)
P02931 2.73e-05 49 26 2 126 1 ompF Outer membrane porin F Escherichia coli (strain K12)
A0A0H3NBQ0 2.91e-05 49 28 3 119 1 ompD Outer membrane porin OmpD Salmonella typhimurium (strain SL1344)
P07238 3.34e-05 49 27 5 130 3 LC Outer membrane porin protein LC Enterobacteria phage PA-2
P0A263 3.44e-05 49 28 3 123 3 ompC Outer membrane porin C Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A0A0H3NJI9 3.44e-05 49 28 3 123 1 ompC Outer membrane porin C Salmonella typhimurium (strain SL1344)
P0A264 3.44e-05 49 28 3 123 1 ompC Outer membrane porin C Salmonella typhi
P76335 5.99e-05 46 28 3 121 5 yedS Putative outer membrane protein YedS Escherichia coli (strain K12)
Q48473 6.94e-05 48 25 2 119 1 ompC Outer membrane porin C Klebsiella pneumoniae
P20149 0.000288 46 25 9 288 3 ompP2 Outer membrane protein P2 Haemophilus influenzae
P43839 0.000391 45 22 14 404 3 ompP2 Outer membrane protein P2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H3CMG2 0.000647 45 26 4 123 3 ompC Outer membrane porin C Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)
P30705 0.000881 44 26 4 119 2 phoE Outer membrane porin PhoE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q47490 0.000881 44 26 3 119 2 phoE Outer membrane porin PhoE Enterobacter cloacae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00215
Feature type CDS
Gene -
Product porin
Location 66994 - 68184 (strand: 1)
Length 1191 (nucleotides) / 396 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_30
Orthogroup size 14
N. genomes 7

Actions

Genomic region

Domains

PF00267 Gram-negative porin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3203 Cell wall/membrane/envelope biogenesis (M) M Outer membrane porin OmpC/OmpF/PhoE

Protein Sequence

MKSLKPLAALVGLLVLSGSANAVNVYNDKGTRFDVNGQFRLKTQVTSKDHEMRMRDDGSRIGFFGSHELTNDIKVFGKLEWGSDTQKTNSDNEKTNFDLYNRVGYVGFSHRDYGQIQFGRTYIPIDWVKKSSYGYGNTGVFYFSDVLGRAVGYSSKGVGKNNFMTRLPQTIFIETNRYEGFKLAATLTGKDGKDNDGDGKNGDRRTGDIRHAYSVVGFYKSTFGLEFDAGYSAAVGEPNLYPDSVVGNKKPENSILAFGAEYFFPGREFSIGIDYGQSRGKNTGLTLREGATEKDYKWNSVKGDWKANLYGVGVKWHWDRIESGMYAGYYLRDGDANTFNYKKETYTVGVDKRFAVSKYNNLRLFAEMAYDDARSENPAYEDKKQYIFETGMRLYF

Flanking regions ( +/- flanking 50bp)

CCTTAGAAAGAAAATCATAAAACTATAGAAAATAGATGGGTATTTTAATCATGAAAAGCTTAAAGCCTTTAGCAGCGCTGGTAGGTTTATTGGTTCTGTCGGGATCTGCAAACGCAGTAAATGTGTACAACGATAAAGGTACACGTTTTGATGTTAACGGTCAGTTCCGTTTAAAAACGCAAGTGACAAGTAAAGATCATGAAATGCGTATGCGTGATGATGGTAGCCGTATCGGTTTCTTTGGTTCCCATGAACTGACTAACGATATCAAAGTGTTTGGTAAGTTAGAGTGGGGTTCAGATACTCAAAAAACCAACAGTGATAATGAGAAAACAAACTTTGATCTGTACAACCGCGTAGGCTATGTCGGTTTTTCTCATCGTGATTATGGACAAATCCAATTTGGTCGTACTTATATCCCAATTGACTGGGTAAAAAAATCAAGCTACGGCTATGGTAATACAGGGGTATTTTACTTTAGTGATGTATTAGGCCGTGCAGTAGGTTATTCAAGTAAAGGGGTTGGTAAAAACAACTTTATGACCCGTTTACCACAAACTATCTTTATTGAAACAAACCGTTATGAAGGCTTTAAATTAGCGGCAACTTTAACGGGTAAAGATGGTAAAGATAATGATGGTGATGGAAAAAATGGCGATCGCAGAACCGGTGATATCCGTCATGCCTATTCTGTCGTTGGTTTCTATAAATCAACTTTCGGTTTAGAGTTTGATGCGGGTTACTCAGCAGCTGTAGGTGAGCCTAATCTATACCCAGATAGTGTTGTTGGTAATAAAAAACCAGAAAATAGTATCTTAGCATTCGGTGCTGAATACTTCTTCCCTGGTCGCGAATTCTCTATCGGTATCGACTATGGTCAATCTCGCGGTAAAAATACTGGCTTAACCTTAAGAGAAGGTGCAACTGAGAAAGACTATAAATGGAACTCAGTTAAAGGCGATTGGAAAGCGAATTTATATGGTGTTGGTGTGAAATGGCACTGGGATCGTATCGAAAGTGGTATGTATGCGGGTTATTACCTGCGTGATGGCGATGCTAACACTTTCAACTACAAAAAAGAAACCTATACTGTGGGTGTAGATAAACGTTTTGCGGTATCTAAATACAACAACTTACGTTTATTCGCTGAAATGGCATATGATGATGCTCGTAGCGAAAACCCAGCTTATGAAGATAAAAAACAATATATCTTTGAAACTGGTATGCGTCTGTACTTCTAGTTTTATCAAAGCAAGTATTGTTTGACAGAAGTAATAAAAGGAGAGCAACT