COG3203


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3203, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane porin OmpC/OmpF/PhoE
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3203 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_49 FBDBKF_07255 128861 129961 -1 ompC Porin OmpC Morganella morganii S1
1 group_49 FBDBKF_09060 27217 28362 -1 ompC Outer membrane porin OmpC/OmpF/PhoE Morganella morganii S1
2 group_49 EHELCC_03715 56225 57325 1 ompC Porin OmpC Morganella morganii S2
3 group_49 EHELCC_10350 117742 118887 1 ompC Outer membrane porin OmpC/OmpF/PhoE Morganella morganii S2
4 group_49 NLDBIP_03715 56021 57121 1 ompC Porin OmpC Morganella morganii S4
5 group_49 NLDBIP_10695 96013 97158 1 ompC Outer membrane porin OmpC/OmpF/PhoE Morganella morganii S4
6 group_49 LHKJJB_09545 56135 57235 1 ompC Porin OmpC Morganella morganii S3
7 group_49 LHKJJB_10660 94370 95515 -1 ompC Outer membrane porin OmpC/OmpF/PhoE Morganella morganii S3
8 group_49 HKOGLL_09430 133817 134917 -1 ompC Porin OmpC Morganella morganii S5
9 group_49 HKOGLL_13720 27671 28816 -1 ompC Outer membrane porin OmpC/OmpF/PhoE Morganella morganii S5
10 group_49 F4V73_RS01440 316919 317998 -1 porin Morganella psychrotolerans
11 group_49 F4V73_RS10885 316433 317587 1 porin Morganella psychrotolerans
12 group_49 PMI_RS00215 66994 68184 1 porin Proteus mirabilis HI4320
13 group_49 PMI_RS03760 848725 849840 -1 porin Proteus mirabilis HI4320