COG1310


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1310, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 27 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG1310 is associated with 27 different proteins (see tab "Protein list" and "Profile")
The 27 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_27 FBDBKF_00045 8002 8715 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S1
1 group_27 FBDBKF_11500 96014 96727 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S1
2 group_27 FBDBKF_13045 3427 4155 -1 Phage tail protein Morganella morganii S1
3 group_131 FBDBKF_18570 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S1
4 group_131 FBDBKF_19340 2492 3199 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S1
5 group_27 EHELCC_01500 300153 300866 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S2
6 group_131 EHELCC_15145 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S2
7 group_27 EHELCC_17715 3988 4701 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S2
8 group_131 EHELCC_19320 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S2
9 group_27 NLDBIP_01960 379270 379983 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S4
10 group_27 NLDBIP_05045 3814 4527 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S4
11 group_131 NLDBIP_15675 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S4
12 group_131 NLDBIP_19450 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S4
13 group_27 NLDBIP_19910 409 1137 -1 Phage tail protein Morganella morganii S4
14 group_27 LHKJJB_00075 12702 13415 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S3
15 group_131 LHKJJB_16165 111796 112506 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S3
16 group_27 LHKJJB_19160 3475 4188 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S3
17 group_131 LHKJJB_19355 2492 3199 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S3
18 group_27 LHKJJB_19870 409 1137 -1 Phage tail protein Morganella morganii S3
19 group_27 HKOGLL_00115 18213 18926 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S5
20 group_27 HKOGLL_06025 255627 256355 1 Phage tail protein Morganella morganii S5
21 group_131 HKOGLL_15285 111008 111718 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S5
22 group_27 HKOGLL_15305 4778 5491 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S5
23 group_131 HKOGLL_19255 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S5
24 group_27 F4V73_RS02235 470701 471426 1 NlpC/P60 family protein Morganella psychrotolerans
25 group_27 F4V73_RS18170 77476 78249 -1 C40 family peptidase Morganella psychrotolerans
26 group_131 PMI_RS02600 567122 567832 1 C40 family peptidase Proteus mirabilis HI4320