Homologs in group_2268

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17440 FBDBKF_17440 100.0 Morganella morganii S1 sbcD exonuclease subunit SbcD
EHELCC_17335 EHELCC_17335 100.0 Morganella morganii S2 sbcD exonuclease subunit SbcD
LHKJJB_17780 LHKJJB_17780 100.0 Morganella morganii S3 sbcD exonuclease subunit SbcD
HKOGLL_17790 HKOGLL_17790 100.0 Morganella morganii S5 sbcD exonuclease subunit SbcD
F4V73_RS16615 F4V73_RS16615 81.9 Morganella psychrotolerans sbcD exonuclease subunit SbcD
PMI_RS00245 PMI_RS00245 56.8 Proteus mirabilis HI4320 sbcD exonuclease subunit SbcD

Distribution of the homologs in the orthogroup group_2268

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2268

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG76 5.44e-153 442 57 4 393 1 sbcD Nuclease SbcCD subunit D Escherichia coli (strain K12)
P0AG77 5.44e-153 442 57 4 393 3 sbcD Nuclease SbcCD subunit D Escherichia coli O157:H7
O68033 5.45e-39 148 35 8 297 3 sbcD Nuclease SbcCD subunit D Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
O51769 6.04e-36 140 28 7 321 3 sbcD Nuclease SbcCD subunit D Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P23479 6.75e-33 131 29 10 329 3 sbcD Nuclease SbcCD subunit D Bacillus subtilis (strain 168)
Q7A5S7 7.42e-32 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain N315)
Q99UD1 7.42e-32 127 26 10 399 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM8 7.42e-32 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH9)
A6U1G6 7.42e-32 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH1)
A7X202 7.42e-32 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q8NWV2 1.09e-31 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MW2)
P0C7L6 1.09e-31 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300 / TCH1516)
Q6G9L3 1.09e-31 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MSSA476)
A6QGP7 1.09e-31 127 26 10 399 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Newman)
Q5HG73 1.09e-31 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain COL)
Q2FYT4 1.09e-31 127 26 10 399 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH89 1.09e-31 127 26 10 399 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300)
Q6GH61 1e-30 124 29 6 294 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MRSA252)
Q8CPC6 9.11e-30 122 29 5 296 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPJ4 9.11e-30 122 29 5 296 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q2YXX1 1.84e-29 121 29 7 300 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q49XE0 6.58e-28 117 31 11 305 3 sbcD Nuclease SbcCD subunit D Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q4L654 9.02e-24 105 26 7 304 3 sbcD Nuclease SbcCD subunit D Staphylococcus haemolyticus (strain JCSC1435)
Q9X1X0 7.34e-14 76 25 23 420 1 mre11 DNA double-strand break repair protein Mre11 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q8TXI3 1.76e-10 66 25 13 301 3 mre11 DNA double-strand break repair protein Mre11 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q96YR6 6.04e-07 55 34 1 86 1 mre11 DNA double-strand break repair protein Mre11 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Q58719 7.03e-05 48 21 10 287 1 mre11 DNA double-strand break repair protein Mre11 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8NKQ0 0.000271 46 29 1 87 1 mre11 DNA double-strand break repair protein Mre11 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q97WG9 0.001 45 26 1 87 3 mre11 DNA double-strand break repair protein Mre11 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_17860
Feature type CDS
Gene sbcD
Product exonuclease subunit SbcD
Location 21906 - 23198 (strand: -1)
Length 1293 (nucleotides) / 430 (amino acids)

Contig

Accession ZDB_538
Length 42795 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2268
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF12320 Type 5 capsule protein repressor C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0420 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD nuclease subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03547 DNA repair protein SbcD/Mre11 - -

Protein Sequence

MKIIHTSDWHLGQYFYTKNRLQEHLQFSDWLINLIKEQQADALIVAGDVFDTASPPSYARELYNRFVAQLQQTGCHLIVLAGNHDAVATLNESRELMACLNADVIARPDPARDLIVLYNKQNQPGAIVCAVPFLRPRDILESQAGQSEAEKQLALLTAIQTHYQSLYDRAVAKRTELDTDVPIIMTGHLTTVGAKTSESVRDIYIGTLDAFPAGAFPPADYIALGHIHRAQSIGDSGTIRYSGSPVPLSFDESGQEKSVFLLTLDSNSITAIDAVPVPCFQPMVCLKGDLDTISQAFEQFPPRDEHTQPVWLDIEVTGRDYLPDIQKRIQALTEPLAAEVILLRRERRQITADNSEALRETLNELTPDDVFARRLALSDTEEEDIPRLTTLFRRVCEQVRDQAESDSSEISTGISGKNNTRTDSRKGKSE

Flanking regions ( +/- flanking 50bp)

AACCGCCTAACGCAATGCGCATTCAGTTCGCCCGGCAGGAATAACCATATATGAAAATCATTCACACATCAGACTGGCATCTCGGACAATATTTTTACACTAAAAACCGGTTACAGGAACATCTGCAGTTTTCAGACTGGCTGATAAACCTGATAAAAGAACAGCAGGCGGATGCCCTGATTGTCGCCGGAGATGTGTTTGATACCGCCTCCCCGCCGAGTTACGCCCGTGAGCTGTATAACCGTTTTGTTGCACAACTGCAACAGACCGGCTGTCATCTGATTGTGCTTGCCGGTAACCATGATGCCGTTGCCACGCTGAATGAATCCCGTGAACTGATGGCCTGCCTGAATGCGGATGTGATTGCCCGGCCGGATCCGGCGCGGGATCTGATCGTACTTTATAATAAGCAGAACCAACCCGGTGCGATTGTCTGTGCTGTGCCGTTTCTGCGGCCGCGCGATATTCTGGAAAGTCAGGCCGGACAATCCGAAGCAGAGAAACAACTGGCACTGCTGACCGCGATACAGACACATTATCAGTCCCTTTATGACAGAGCGGTGGCAAAACGGACTGAGTTGGATACAGATGTCCCAATCATTATGACCGGCCACCTGACAACAGTGGGTGCCAAAACATCGGAATCTGTCCGTGATATTTATATCGGCACACTGGATGCCTTTCCCGCCGGTGCTTTCCCGCCGGCGGATTACATTGCCCTCGGGCATATTCACCGCGCACAGTCCATCGGTGACAGCGGCACCATCCGTTACAGCGGTTCCCCCGTCCCGCTCAGTTTTGATGAATCCGGACAGGAAAAAAGTGTCTTCCTGCTCACCCTGGATAGCAACAGCATTACGGCGATTGATGCGGTACCGGTTCCCTGTTTTCAGCCGATGGTCTGCCTGAAAGGCGATCTGGATACCATCAGTCAGGCGTTTGAACAGTTTCCGCCCCGTGATGAACACACACAGCCGGTCTGGCTGGACATCGAAGTTACCGGGCGGGATTACCTGCCGGACATTCAGAAACGCATTCAGGCACTGACAGAGCCGCTGGCCGCAGAAGTGATCCTGCTGCGGCGCGAGCGCAGACAGATAACCGCAGACAACAGCGAAGCTCTGCGCGAAACCCTGAATGAGCTGACTCCGGATGATGTTTTTGCCCGGCGTCTGGCACTCAGTGATACCGAAGAAGAGGATATTCCGCGTCTCACCACCCTTTTCCGCCGCGTTTGTGAGCAGGTTCGTGACCAGGCAGAGAGTGACAGCAGTGAAATCAGTACCGGTATCAGCGGAAAAAACAATACCCGCACAGACAGCCGGAAAGGAAAAAGTGAATGAAGATCCTGACATTACGGTTTAAAAATATCAATTCACTGCAGGGCGAATGG