COG0420


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0420, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA repair exonuclease SbcCD nuclease subunit
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0420 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2268 FBDBKF_17440 19598 20890 1 sbcD exonuclease subunit SbcD Morganella morganii S1
1 group_2268 EHELCC_17335 19598 20890 1 sbcD exonuclease subunit SbcD Morganella morganii S2
2 group_2268 NLDBIP_17860 21906 23198 -1 sbcD exonuclease subunit SbcD Morganella morganii S4
3 group_2268 LHKJJB_17780 21904 23196 -1 sbcD exonuclease subunit SbcD Morganella morganii S3
4 group_2268 HKOGLL_17790 21904 23196 -1 sbcD exonuclease subunit SbcD Morganella morganii S5
5 group_2268 F4V73_RS16615 143325 144551 1 sbcD exonuclease subunit SbcD Morganella psychrotolerans
6 group_4211 F4V73_RS17930 29433 30524 -1 metallophosphoesterase Morganella psychrotolerans
7 group_2268 PMI_RS00245 77490 78722 -1 sbcD exonuclease subunit SbcD Proteus mirabilis HI4320