Homologs in group_2268

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17440 FBDBKF_17440 56.8 Morganella morganii S1 sbcD exonuclease subunit SbcD
EHELCC_17335 EHELCC_17335 56.8 Morganella morganii S2 sbcD exonuclease subunit SbcD
NLDBIP_17860 NLDBIP_17860 56.8 Morganella morganii S4 sbcD exonuclease subunit SbcD
LHKJJB_17780 LHKJJB_17780 56.8 Morganella morganii S3 sbcD exonuclease subunit SbcD
HKOGLL_17790 HKOGLL_17790 56.8 Morganella morganii S5 sbcD exonuclease subunit SbcD
F4V73_RS16615 F4V73_RS16615 56.7 Morganella psychrotolerans sbcD exonuclease subunit SbcD

Distribution of the homologs in the orthogroup group_2268

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2268

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG76 3.5e-148 429 55 5 396 1 sbcD Nuclease SbcCD subunit D Escherichia coli (strain K12)
P0AG77 3.5e-148 429 55 5 396 3 sbcD Nuclease SbcCD subunit D Escherichia coli O157:H7
O68033 4.14e-37 142 32 11 319 3 sbcD Nuclease SbcCD subunit D Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P23479 2.38e-34 134 27 9 337 3 sbcD Nuclease SbcCD subunit D Bacillus subtilis (strain 168)
Q8CPC6 3.18e-34 134 25 10 393 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPJ4 3.18e-34 134 25 10 393 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O51769 1.91e-33 132 26 17 431 3 sbcD Nuclease SbcCD subunit D Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q49XE0 2.29e-28 117 26 10 341 3 sbcD Nuclease SbcCD subunit D Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q6GH61 1.02e-27 115 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MRSA252)
Q2YXX1 1.04e-27 115 27 8 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q8NWV2 4.07e-27 114 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MW2)
P0C7L6 4.07e-27 114 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300 / TCH1516)
Q6G9L3 4.07e-27 114 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MSSA476)
A6QGP7 4.07e-27 114 26 6 299 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Newman)
Q5HG73 4.07e-27 114 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain COL)
Q2FYT4 4.07e-27 114 26 6 299 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH89 4.07e-27 114 26 6 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300)
Q7A5S7 1.57e-26 112 26 7 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain N315)
Q99UD1 1.57e-26 112 26 7 299 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM8 1.57e-26 112 26 7 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH9)
A6U1G6 1.57e-26 112 26 7 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH1)
A7X202 1.57e-26 112 26 7 299 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q4L654 1.09e-21 99 27 6 264 3 sbcD Nuclease SbcCD subunit D Staphylococcus haemolyticus (strain JCSC1435)
Q9X1X0 2.04e-13 74 24 11 285 1 mre11 DNA double-strand break repair protein Mre11 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q8TXI3 1.28e-05 50 26 1 86 3 mre11 DNA double-strand break repair protein Mre11 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8NKQ0 3.17e-05 49 32 2 88 1 mre11 DNA double-strand break repair protein Mre11 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q97WG9 6.37e-05 48 24 10 278 3 mre11 DNA double-strand break repair protein Mre11 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q96YR6 6.62e-05 48 30 1 86 1 mre11 DNA double-strand break repair protein Mre11 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Q8PUY5 0.000172 47 32 3 89 3 mre11 DNA double-strand break repair protein Mre11 Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q8TRL2 0.00029 46 31 3 89 3 mre11 DNA double-strand break repair protein Mre11 Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P62132 0.00033 46 31 2 95 3 mre11 DNA double-strand break repair protein Mre11 Nanoarchaeum equitans (strain Kin4-M)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00245
Feature type CDS
Gene sbcD
Product exonuclease subunit SbcD
Location 77490 - 78722 (strand: -1)
Length 1233 (nucleotides) / 410 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2268
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF12320 Type 5 capsule protein repressor C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0420 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD nuclease subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03547 DNA repair protein SbcD/Mre11 - -

Protein Sequence

MRIIHTSDWHLGQYFFTKTRAQEHQQFLDWLLAQIREQQVDAVIVAGDIFDTGSPPSYARELYNRFVVAIRDTQCQLIILGGNHDSVATLNESKSLLACLNTTVIANVHTETPQAPIILYQKNHTPGALLCAIPYLRPRDMINSKSGQSGADKQGALKEAIADYYQRQYQAALDLRKQLNVNIPIIATGHLTTIGASVSDSVREIYIGTLEAFNATLFPPFDYIALGHIHRPQRVNKSGHIRYSGSPIPLSFDESAQQKSVCLIDFEQDKLAEMTLLPIPEFQLLRTLSGSLQEIATQLEKLATQYNEMDTTIWLDIEVSTQDYLSDIQTRIQELTQSPLFEVIVLRRARKQRQALMQNEKETLTELTVYDVFERRLAQHQFETEEDKIRLTTLFKQAVEMAEQEDNNAR

Flanking regions ( +/- flanking 50bp)

AAAAAAGTAAGGTGCGCTATACTGACGGCAGTTAACATTAAGGGATAGCAATGCGGATTATTCACACCTCAGATTGGCATTTAGGACAATATTTTTTTACAAAAACTCGCGCCCAAGAGCACCAACAATTTCTCGATTGGCTATTAGCGCAAATCCGTGAACAACAAGTTGATGCAGTTATTGTTGCAGGGGATATCTTTGATACTGGCTCCCCCCCCAGTTATGCCCGAGAGCTTTATAATCGATTTGTCGTCGCAATAAGAGATACTCAGTGCCAACTGATTATTTTAGGGGGTAATCATGATTCTGTGGCAACGCTAAATGAATCTAAATCACTGTTAGCGTGTTTAAATACCACCGTCATTGCTAATGTTCACACTGAAACCCCACAAGCCCCTATTATTCTTTATCAAAAAAATCACACACCTGGAGCATTACTTTGTGCAATCCCCTATTTACGCCCTAGAGATATGATAAATAGCAAAAGTGGGCAATCGGGAGCAGACAAACAGGGCGCTTTAAAAGAAGCGATCGCAGATTATTATCAACGCCAATATCAAGCCGCGCTCGACTTACGAAAACAACTCAATGTTAACATCCCTATCATTGCCACAGGGCATCTGACAACGATTGGCGCCAGTGTTAGCGATTCGGTACGTGAAATTTATATCGGCACATTAGAAGCCTTTAACGCAACCCTATTTCCTCCATTTGACTATATCGCCCTTGGTCATATTCATCGCCCACAGCGCGTCAATAAATCGGGTCATATTCGCTACAGTGGTTCACCTATTCCATTAAGTTTTGATGAAAGTGCACAACAGAAAAGTGTTTGTCTTATCGATTTTGAGCAAGATAAGTTAGCGGAAATGACACTATTACCCATCCCTGAGTTTCAGCTATTACGCACTCTTTCAGGCTCGTTACAAGAAATTGCCACACAACTCGAAAAGTTAGCAACACAATATAATGAAATGGATACCACGATTTGGCTAGATATTGAAGTTTCAACTCAAGATTATCTCAGTGATATTCAAACCCGTATTCAAGAGCTAACTCAATCGCCACTCTTTGAAGTGATCGTATTAAGAAGAGCGAGAAAACAACGTCAAGCACTGATGCAAAATGAGAAAGAAACCCTAACTGAACTGACTGTATATGATGTATTTGAAAGGCGCTTAGCTCAACACCAGTTTGAAACCGAGGAAGACAAAATACGGTTAACCACACTCTTTAAGCAAGCGGTTGAAATGGCAGAGCAAGAGGATAACAACGCACGATGAAAATCTTAAGTCTGCGCTTTAAAAACATTAACTCACTCAAAGGCGAATGG