Homologs in group_2268

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17440 FBDBKF_17440 81.9 Morganella morganii S1 sbcD exonuclease subunit SbcD
EHELCC_17335 EHELCC_17335 81.9 Morganella morganii S2 sbcD exonuclease subunit SbcD
NLDBIP_17860 NLDBIP_17860 81.9 Morganella morganii S4 sbcD exonuclease subunit SbcD
LHKJJB_17780 LHKJJB_17780 81.9 Morganella morganii S3 sbcD exonuclease subunit SbcD
HKOGLL_17790 HKOGLL_17790 81.9 Morganella morganii S5 sbcD exonuclease subunit SbcD
PMI_RS00245 PMI_RS00245 56.7 Proteus mirabilis HI4320 sbcD exonuclease subunit SbcD

Distribution of the homologs in the orthogroup group_2268

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2268

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG76 6.35e-153 441 57 4 393 1 sbcD Nuclease SbcCD subunit D Escherichia coli (strain K12)
P0AG77 6.35e-153 441 57 4 393 3 sbcD Nuclease SbcCD subunit D Escherichia coli O157:H7
O68033 8.06e-41 152 33 7 298 3 sbcD Nuclease SbcCD subunit D Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
O51769 1.42e-36 141 28 8 323 3 sbcD Nuclease SbcCD subunit D Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P23479 7.23e-36 138 28 8 325 3 sbcD Nuclease SbcCD subunit D Bacillus subtilis (strain 168)
Q7A5S7 1.21e-29 121 31 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain N315)
Q99UD1 1.21e-29 121 31 7 279 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu50 / ATCC 700699)
A5ISM8 1.21e-29 121 31 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH9)
A6U1G6 1.21e-29 121 31 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain JH1)
A7X202 1.21e-29 121 31 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q8CPC6 1.28e-29 121 29 5 294 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPJ4 1.28e-29 121 29 5 294 3 sbcD Nuclease SbcCD subunit D Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8NWV2 2.14e-29 120 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MW2)
P0C7L6 2.14e-29 120 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300 / TCH1516)
Q6G9L3 2.14e-29 120 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MSSA476)
A6QGP7 2.14e-29 120 30 7 279 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain Newman)
Q5HG73 2.14e-29 120 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain COL)
Q2FYT4 2.14e-29 120 30 7 279 1 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH89 2.14e-29 120 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain USA300)
Q6GH61 1.25e-28 118 30 7 279 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain MRSA252)
Q2YXX1 2.56e-28 117 29 8 294 3 sbcD Nuclease SbcCD subunit D Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q49XE0 2.58e-24 106 29 7 276 3 sbcD Nuclease SbcCD subunit D Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q4L654 6.93e-22 99 26 8 301 3 sbcD Nuclease SbcCD subunit D Staphylococcus haemolyticus (strain JCSC1435)
Q9X1X0 3.39e-13 73 26 13 283 1 mre11 DNA double-strand break repair protein Mre11 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q8TXI3 5.24e-09 61 25 15 302 3 mre11 DNA double-strand break repair protein Mre11 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q96YR6 6.2e-07 54 34 2 87 1 mre11 DNA double-strand break repair protein Mre11 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
O07522 6.04e-05 48 23 11 281 2 yhaO Uncharacterized metallophosphoesterase YhaO Bacillus subtilis (strain 168)
Q97WG9 0.000105 47 30 2 88 3 mre11 DNA double-strand break repair protein Mre11 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q8NKQ0 0.000166 47 31 1 87 1 mre11 DNA double-strand break repair protein Mre11 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q9YFY8 0.000385 46 23 11 280 3 mre11 DNA double-strand break repair protein Mre11 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
P62132 0.000677 45 29 2 94 3 mre11 DNA double-strand break repair protein Mre11 Nanoarchaeum equitans (strain Kin4-M)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16615
Feature type CDS
Gene sbcD
Product exonuclease subunit SbcD
Location 143325 - 144551 (strand: 1)
Length 1227 (nucleotides) / 408 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2268
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF12320 Type 5 capsule protein repressor C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0420 Replication, recombination and repair (L) L DNA repair exonuclease SbcCD nuclease subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03547 DNA repair protein SbcD/Mre11 - -

Protein Sequence

MKIIHTSDWHLGQYFYTKNRLHEHQQFSDWLINLIEKQQVDALIIAGDIFDTASPPSYARELYNQFVAKLQRTGCHLIVLAGNHDAVATLNESRELLACLNVNVVARPDPEQDLIVLYNKQKRPGAIVCAIPFLRPRDILLSQAGQSESEKQQALLNAIQLYYQSLYDKAMAKRTELSADVPIIMTGHLTTVGAKTTDSVRDIYIGTLEAFPAGAFPPADYIALGHIHRAQNIGDSGTVRYSGSPVPLSFDETGQEKSVFLLTLNDTQITNIEPVTVPCFQPMVCLKGDLDTISRALSQFPLRDEKIQPVWLDIEIAGRDYLPDIQKRIQALTEPYAAEVVLLRRERRKQQWQESDILKETLNELTTEEVFARRLALSDTEEDAIPRLTTLFRQVCQQVSEDQKVKSE

Flanking regions ( +/- flanking 50bp)

GGCAGCAAACTGCACACACGGGTCGTTTTCCGGACAGGGATCAATAATTAATGAAGATAATTCACACATCAGACTGGCATCTGGGGCAATATTTTTACACCAAAAACCGGCTGCATGAGCATCAGCAGTTTTCAGACTGGTTGATCAACCTGATTGAAAAACAACAGGTTGATGCGCTTATTATTGCCGGTGATATTTTTGATACCGCCTCACCACCGAGCTACGCCCGGGAACTCTATAATCAATTTGTCGCAAAACTGCAACGTACCGGTTGTCATCTGATTGTACTTGCCGGTAATCATGATGCGGTGGCAACACTTAATGAGTCCCGTGAATTACTTGCCTGCCTGAATGTGAATGTCGTCGCCCGCCCTGATCCGGAGCAGGATCTTATCGTACTGTATAACAAGCAAAAACGACCCGGTGCGATTGTCTGTGCAATTCCGTTTCTGCGTCCCCGCGATATTCTGCTGAGTCAGGCAGGACAATCAGAAAGTGAAAAACAGCAGGCACTGCTGAACGCGATACAGCTTTATTATCAGTCACTTTATGACAAAGCTATGGCAAAACGTACAGAACTGAGTGCTGATGTCCCGATCATTATGACCGGGCATCTGACCACCGTGGGAGCCAAAACCACAGATTCAGTCCGGGATATTTACATCGGCACCCTGGAAGCATTTCCGGCAGGGGCATTTCCGCCTGCTGATTATATTGCACTCGGTCATATTCACCGCGCTCAGAATATCGGTGACAGCGGCACTGTCCGCTACAGTGGCTCACCGGTTCCGCTGAGTTTTGATGAAACAGGGCAGGAAAAAAGTGTCTTTCTGCTGACCTTAAATGACACACAAATCACCAATATTGAGCCGGTTACGGTTCCCTGTTTTCAGCCGATGGTCTGCCTGAAAGGCGATCTTGATACTATCAGCCGCGCGCTGTCACAATTTCCTTTGCGGGATGAAAAAATACAACCGGTCTGGCTGGATATCGAAATTGCCGGGCGGGATTATCTGCCGGATATACAGAAACGCATTCAGGCACTGACTGAACCTTACGCCGCAGAAGTGGTACTTCTGCGCCGGGAGCGCCGCAAACAACAGTGGCAGGAGAGTGATATTCTCAAAGAAACCCTGAATGAGCTCACCACAGAAGAGGTTTTTGCGCGCCGACTGGCGCTCAGTGATACTGAAGAAGACGCTATTCCCCGCCTGACCACGCTTTTCCGGCAGGTCTGTCAGCAGGTCAGTGAGGATCAGAAGGTAAAAAGCGAATGAAAATCCTGACATTACGTTTCAAAAATATTAATTCCCTTCAGGGCGAATGG