Orthogroup:group_2268


Homologs in group_2268

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17440 FBDBKF_17440 Morganella morganii S1 sbcD exonuclease subunit SbcD
EHELCC_17335 EHELCC_17335 Morganella morganii S2 sbcD exonuclease subunit SbcD
NLDBIP_17860 NLDBIP_17860 Morganella morganii S4 sbcD exonuclease subunit SbcD
LHKJJB_17780 LHKJJB_17780 Morganella morganii S3 sbcD exonuclease subunit SbcD
HKOGLL_17790 HKOGLL_17790 Morganella morganii S5 sbcD exonuclease subunit SbcD
F4V73_RS16615 F4V73_RS16615 Morganella psychrotolerans sbcD exonuclease subunit SbcD
PMI_RS00245 PMI_RS00245 Proteus mirabilis HI4320 sbcD exonuclease subunit SbcD

Distribution of group_2268 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2268 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2268

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2268.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sbcD 7

Product

# Product Occurence
1 exonuclease subunit SbcD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0420 7 L Replication, recombination and repair (L) DNA repair exonuclease SbcCD nuclease subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03547 7 DNA repair protein SbcD/Mre11 - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00149 7 Calcineurin-like phosphoesterase
PF12320 7 Type 5 capsule protein repressor C-terminal domain

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
DNA double-strand break repair protein Mre11 10
Nuclease SbcCD subunit D 23
Uncharacterized metallophosphoesterase YhaO 1

Protein length

Min length 408
Max length 430
Mean length (sd) 424.0 (10.3)
Median length 430.0

Protein length distribution