Homologs in group_1371

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08485 FBDBKF_08485 100.0 Morganella morganii S1 rnr ribonuclease R
EHELCC_13040 EHELCC_13040 100.0 Morganella morganii S2 rnr ribonuclease R
LHKJJB_13175 LHKJJB_13175 100.0 Morganella morganii S3 rnr ribonuclease R
HKOGLL_11855 HKOGLL_11855 100.0 Morganella morganii S5 rnr ribonuclease R
F4V73_RS09705 F4V73_RS09705 92.6 Morganella psychrotolerans rnr ribonuclease R
PMI_RS16780 PMI_RS16780 77.7 Proteus mirabilis HI4320 rnr ribonuclease R

Distribution of the homologs in the orthogroup group_1371

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1371

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21499 0.0 1211 74 3 775 1 rnr Ribonuclease R Escherichia coli (strain K12)
P30851 0.0 1206 74 3 775 3 rnr Ribonuclease R Shigella flexneri
P44907 0.0 1019 65 2 742 3 rnr Ribonuclease R Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KNY1 0.0 1013 64 2 743 3 rnr Ribonuclease R Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P40611 0.0 1000 64 2 739 3 rnr Ribonuclease R Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8K917 0.0 801 52 3 723 3 rnr Ribonuclease R Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57628 0.0 771 49 2 728 3 rnr Ribonuclease R Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O32231 8.01e-175 525 38 7 725 1 rnr Ribonuclease R Bacillus subtilis (strain 168)
O67834 7.94e-146 448 40 4 641 3 rnr Ribonuclease R Aquifex aeolicus (strain VF5)
P54084 2.36e-136 414 50 3 428 3 rnr Ribonuclease R (Fragment) Acidithiobacillus ferrooxidans
Q9WZI1 2.3e-128 403 36 8 695 3 rnr Ribonuclease R Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9CH00 6.39e-128 405 35 16 734 3 rnr1 Ribonuclease R 1 Lactococcus lactis subsp. lactis (strain IL1403)
Q02146 3.61e-87 293 31 11 658 3 rnr2 Ribonuclease R 2 Lactococcus lactis subsp. lactis (strain IL1403)
Q98QL0 1.47e-85 290 35 7 482 3 rnr Ribonuclease R Mycoplasmopsis pulmonis (strain UAB CTIP)
Q9PR88 8.36e-77 266 28 10 658 3 rnr Ribonuclease R Ureaplasma parvum serovar 3 (strain ATCC 700970)
P75529 1.04e-74 261 29 13 636 3 rnr Ribonuclease R Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47350 1.02e-73 258 27 15 647 1 rnr Ribonuclease R Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9PK00 5.7e-73 255 29 19 665 3 rnr Ribonuclease R Chlamydia muridarum (strain MoPn / Nigg)
Q9Z848 1.58e-71 251 27 14 664 3 rnr Ribonuclease R Chlamydia pneumoniae
O84402 1.54e-69 246 29 16 662 3 rnr Ribonuclease R Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q66AH3 8.34e-65 231 30 15 655 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K4J2 8.34e-65 231 30 15 655 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FI01 3.15e-64 230 29 15 655 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TJ37 4.3e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pestis (strain Pestoides F)
Q1CIZ7 4.3e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Nepal516)
A9R8T9 4.3e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Angola)
Q8ZED8 4.3e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pestis
Q1C7L1 4.3e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Antiqua)
B1JKP2 5.85e-64 229 29 15 655 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
B4EW02 1.68e-63 228 29 20 653 3 rnb Exoribonuclease 2 Proteus mirabilis (strain HI4320)
Q46363 3.6e-61 224 26 16 727 3 zam Acetazolamide conferring resistance protein zam Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
D3V184 2.59e-60 219 28 19 665 3 rnb Exoribonuclease 2 Xenorhabdus bovienii (strain SS-2004)
A1JM34 2.79e-59 216 29 16 655 3 rnb Exoribonuclease 2 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
D0Z8E6 4.91e-59 216 30 18 649 3 rnb Exoribonuclease 2 Edwardsiella tarda (strain EIB202)
Q87IJ9 1.52e-58 214 28 15 673 3 rnb Exoribonuclease 2 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q7MEL4 1.44e-57 212 26 13 669 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain YJ016)
Q8D7K6 1.96e-57 211 26 13 669 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain CMCP6)
A8GF49 6.82e-56 207 28 14 644 3 rnb Exoribonuclease 2 Serratia proteamaculans (strain 568)
B2VKS8 9.14e-56 206 29 18 651 3 rnb Exoribonuclease 2 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q6D5S7 1.08e-55 206 28 15 648 3 rnb Exoribonuclease 2 Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A7MMD8 1.17e-55 206 28 16 653 3 rnb Exoribonuclease 2 Cronobacter sakazakii (strain ATCC BAA-894)
C6DK05 5.56e-55 204 27 13 643 3 rnb Exoribonuclease 2 Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B7VSB8 6.03e-54 201 26 17 683 3 rnb Exoribonuclease 2 Vibrio atlanticus (strain LGP32)
Q7N4F5 7.77e-54 201 29 23 662 3 rnb Exoribonuclease 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
C3LW69 1.5e-53 201 27 17 676 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain M66-2)
Q9KLE1 1.5e-53 201 27 17 676 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A4WAX5 2.14e-53 199 27 16 651 3 rnb Exoribonuclease 2 Enterobacter sp. (strain 638)
A6T7Z4 3.18e-53 199 27 14 645 3 rnb Exoribonuclease 2 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A5F0G1 1.05e-52 198 27 16 658 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B5XS03 1.27e-52 197 27 14 645 3 rnb Exoribonuclease 2 Klebsiella pneumoniae (strain 342)
B8D7G3 3.5e-52 196 28 16 602 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
B8D959 3.5e-52 196 28 16 602 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
B7LRZ1 4.42e-52 196 28 14 647 3 rnb Exoribonuclease 2 Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q8Z7C9 6.83e-52 195 28 15 647 3 rnb Exoribonuclease 2 Salmonella typhi
B4TJI0 6.83e-52 195 28 15 647 3 rnb Exoribonuclease 2 Salmonella heidelberg (strain SL476)
B5FU93 6.83e-52 195 28 15 647 3 rnb Exoribonuclease 2 Salmonella dublin (strain CT_02021853)
B5R9Y0 6.97e-52 195 28 15 647 3 rnb Exoribonuclease 2 Salmonella gallinarum (strain 287/91 / NCTC 13346)
B4T6U4 1.17e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella newport (strain SL254)
B5R490 1.33e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella enteritidis PT4 (strain P125109)
B5BIE3 1.42e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain AKU_12601)
Q5PCZ6 1.42e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4TX11 1.69e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella schwarzengrund (strain CVM19633)
B5F571 1.69e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella agona (strain SL483)
Q8ZP54 1.74e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MWU8 1.74e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q2NST6 1.83e-51 194 28 17 652 3 rnb Exoribonuclease 2 Sodalis glossinidius (strain morsitans)
P57354 2.53e-51 194 28 19 607 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
C0Q3R1 2.61e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella paratyphi C (strain RKS4594)
Q57NV9 2.61e-51 194 28 15 647 3 rnb Exoribonuclease 2 Salmonella choleraesuis (strain SC-B67)
A9MQ20 1.1e-50 192 28 15 647 3 rnb Exoribonuclease 2 Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A8AG96 1.29e-50 191 28 18 656 3 rnb Exoribonuclease 2 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B7N4A3 2.34e-50 191 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8K9Q5 2.84e-50 191 29 16 563 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q0T5B1 3.31e-50 190 27 15 648 3 rnb Exoribonuclease 2 Shigella flexneri serotype 5b (strain 8401)
P59107 3.54e-50 190 27 15 648 3 rnb Exoribonuclease 2 Shigella flexneri
B1ITG7 6.12e-50 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZZM6 6.12e-50 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O9:H4 (strain HS)
Q8FHT6 9.06e-50 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TI78 9.06e-50 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7UR96 1.28e-49 189 27 16 649 3 rnb Exoribonuclease 2 Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B6IA03 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain SE11)
P30850 1.32e-49 189 27 15 648 1 rnb Exoribonuclease 2 Escherichia coli (strain K12)
B1XBN7 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / DH10B)
C4ZTY2 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / MC4100 / BW2952)
B7NVR1 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7L4C3 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain 55989 / EAEC)
A7ZLA9 1.32e-49 189 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O139:H28 (strain E24377A / ETEC)
A1AAQ4 1.49e-49 188 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O1:K1 / APEC
B5YZR8 1.49e-49 188 27 14 645 3 rnb Exoribonuclease 2 Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X7D6 1.49e-49 188 27 14 645 3 rnb Exoribonuclease 2 Escherichia coli O157:H7
B7MLW3 1.49e-49 188 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O45:K1 (strain S88 / ExPEC)
Q31ZY2 1.64e-49 188 27 15 648 3 rnb Exoribonuclease 2 Shigella boydii serotype 4 (strain Sb227)
B2U0I4 1.64e-49 188 27 15 648 3 rnb Exoribonuclease 2 Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B7LY47 1.67e-49 188 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli O8 (strain IAI1)
Q1RC77 2.68e-49 188 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain UTI89 / UPEC)
B1LGE7 2.92e-49 187 27 15 648 3 rnb Exoribonuclease 2 Escherichia coli (strain SMS-3-5 / SECEC)
Q1LTG8 5.35e-49 187 27 19 651 3 rnb Exoribonuclease 2 Baumannia cicadellinicola subsp. Homalodisca coagulata
P56123 1.07e-48 186 33 8 375 3 rnr Ribonuclease R Helicobacter pylori (strain ATCC 700392 / 26695)
Q3Z135 1.14e-48 186 27 15 648 3 rnb Exoribonuclease 2 Shigella sonnei (strain Ss046)
Q32GP4 1.28e-48 186 27 15 648 3 rnb Exoribonuclease 2 Shigella dysenteriae serotype 1 (strain Sd197)
A0KFR1 7.09e-48 184 29 23 668 3 rnb Exoribonuclease 2 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A1SWZ6 9.55e-48 183 27 18 588 3 rnb Exoribonuclease 2 Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
B8F4C5 2.64e-47 182 26 25 668 3 rnb Exoribonuclease 2 Glaesserella parasuis serovar 5 (strain SH0165)
Q9ZJX9 2.95e-46 179 31 8 388 3 rnr Ribonuclease R Helicobacter pylori (strain J99 / ATCC 700824)
Q9CP74 5.52e-46 178 27 23 670 3 rnb Exoribonuclease 2 Pasteurella multocida (strain Pm70)
O14040 2.96e-45 179 29 9 453 1 dis32 DIS3-like exonuclease 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q17632 4.75e-45 178 29 12 491 1 dis-3 Probable exosome complex exonuclease RRP44 Caenorhabditis elegans
Q9CSH3 6.01e-45 178 26 19 663 1 Dis3 Exosome complex exonuclease RRP44 Mus musculus
B3GXJ4 6.5e-45 175 27 23 669 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
B0BP37 7.49e-45 175 27 22 671 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
A3N0B9 7.85e-45 175 27 23 671 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 5b (strain L20)
P44440 1.42e-44 174 26 25 674 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4QJL5 1.52e-44 174 26 25 680 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain 86-028NP)
A5UFG3 3.76e-44 173 27 26 667 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain PittGG)
Q9Y2L1 1.21e-43 174 33 14 404 1 DIS3 Exosome complex exonuclease RRP44 Homo sapiens
A6VN85 1.95e-42 168 26 22 668 3 rnb Exoribonuclease 2 Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q7VLX8 2.12e-42 168 24 18 667 3 rnb Exoribonuclease 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0V9R3 5.42e-42 168 31 11 419 2 dis3l2 DIS3-like exonuclease 2 Xenopus tropicalis
Q65SI5 1.28e-41 165 26 21 669 3 rnb Exoribonuclease 2 Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9SHL7 2.95e-41 166 29 12 465 2 RRP44A Exosome complex exonuclease RRP44 homolog A Arabidopsis thaliana
Q09568 3.63e-41 166 31 10 374 1 disl-2 DIS3-like exonuclease 2 Caenorhabditis elegans
Q057Q9 1.42e-40 162 28 13 511 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Cinara cedri (strain Cc)
Q0WPN0 1.91e-40 164 30 5 355 2 SOV Inactive exonuclease DIS3L2 Arabidopsis thaliana
P0DM58 2.39e-40 164 30 5 355 1 SOV DIS3-like exonuclease 2 Arabidopsis thaliana
Q89AM0 7.02e-40 160 25 20 597 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8IYB7 2.68e-38 157 30 11 414 1 DIS3L2 DIS3-like exonuclease 2 Homo sapiens
Q8CI75 6.34e-38 156 30 12 414 1 Dis3l2 DIS3-like exonuclease 2 Mus musculus
Q08162 6.53e-38 156 26 23 654 1 DIS3 Exosome complex exonuclease DIS3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A2RV18 4.19e-36 150 27 14 546 2 dis3l DIS3-like exonuclease 1 Danio rerio
Q0P4R5 7.91e-36 150 26 25 719 2 dis3l DIS3-like exonuclease 1 Xenopus tropicalis
P37202 2.22e-35 148 31 11 341 1 dis3 Exosome complex exonuclease dis3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5U2P0 2.8e-34 145 26 13 512 2 Dis3l DIS3-like exonuclease 1 Rattus norvegicus
A0JN80 3.25e-34 144 26 13 516 2 DIS3L DIS3-like exonuclease 1 Bos taurus
Q6GN11 6.44e-34 144 25 21 675 2 dis3l DIS3-like exonuclease 1 Xenopus laevis
Q5R5N8 8.08e-34 143 26 13 516 2 DIS3L DIS3-like exonuclease 1 Pongo abelii
Q8C0S1 1.46e-33 142 25 12 517 1 Dis3l DIS3-like exonuclease 1 Mus musculus
Q8TF46 4.18e-33 141 25 15 583 1 DIS3L DIS3-like exonuclease 1 Homo sapiens
P73177 8.5e-27 120 26 10 430 3 sll1290 Uncharacterized ribonuclease sll1290 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6NQJ6 2.49e-18 94 25 7 369 2 RNR1 Ribonuclease II, chloroplastic/mitochondrial Arabidopsis thaliana
P24276 1.25e-15 85 21 14 533 1 SSD1 Protein SSD1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q5AK62 8.72e-14 79 21 16 487 2 SSD1 Virulence protein SSD1 Candida albicans (strain SC5314 / ATCC MYA-2876)
P39112 1.94e-13 78 23 17 436 1 DSS1 Exoribonuclease II, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
E9QAM5 5.87e-12 73 25 15 439 1 Helz2 3'-5' exoribonuclease HELZ2 Mus musculus
Q9BYK8 5.62e-10 67 33 9 202 1 HELZ2 3'-5' exoribonuclease HELZ2 Homo sapiens
O94525 2.86e-09 64 24 17 409 3 SPBC609.01 Uncharacterized ribonuclease C609.01 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O74454 6.6e-09 63 21 18 565 1 sts5 Protein sts5 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q1MTN7 1.01e-08 62 22 9 374 2 rpm1 Exoribonuclease II, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q57840 2e-06 52 34 1 92 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q980A3 5.31e-05 48 43 1 60 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
B8YB57 6.3e-05 48 43 1 60 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)
B8G3Z1 0.000139 49 33 5 121 3 pnp Polyribonucleotide nucleotidyltransferase Chloroflexus aggregans (strain MD-66 / DSM 9485)
Q2RMR6 0.000311 48 35 5 97 3 pnp Polyribonucleotide nucleotidyltransferase Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
A7NPZ1 0.000398 47 33 5 115 3 pnp Polyribonucleotide nucleotidyltransferase Roseiflexus castenholzii (strain DSM 13941 / HLO8)
P9WH43 0.000546 47 31 3 95 1 rpsA Small ribosomal subunit protein bS1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH42 0.000546 47 31 3 95 3 rpsA Small ribosomal subunit protein bS1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P80870 0.000548 44 30 4 100 1 yugI General stress protein 13 Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_13380
Feature type CDS
Gene rnr
Product ribonuclease R
Location 83552 - 85990 (strand: -1)
Length 2439 (nucleotides) / 812 (amino acids)

Contig

Accession ZDB_528
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1371
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF00773 RNB domain
PF08206 Ribonuclease B OB domain
PF08461 Ribonuclease R winged-helix domain
PF17876 Cold shock domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0557 Transcription (K) K Exoribonuclease R

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12573 ribonuclease R [EC:3.1.13.1] RNA degradation -

Protein Sequence

MSVEKQSNDPYREREAEKYDSPIASREFILETVRRHTKPVSREDIAQELGITGEEAQEALRRRLRAMERDGQLVFTRRQCYALPERLDLIKGTVIGHRDGFGFLRVEGQKDDLYIPQDQMKLCIHGDVILAQVMGADRKGRREARVVRVTEPKTGQIVGRYFTEEGMGFVVPDDSRLCFDILIPKESINGARMGNIVVAELTRRPGKRVQALGVITEVLGEKMGTSIAVDIALRKHEIPFTWPAQVERQVADIREEVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVHCEAKRGGGWRLWVAIADVSYYVRPQTALDDEARSRGTSVYFPSQVVPMLPEVLSNGVCSLNPQVDRLCMVCEMTISAKGKLSGYRFYEAVMSSHARLTYTKVWKILEGDEELREHYAPLVKHLEELHKLYKALAEARDERGAIAFESEEAKFIFNAEKRIERIEPVLRNDAHKLIEECMIMANVAAARFVEKNNEPALYRVHDRPKEDSVINLRTVFNELGLTLPGGLTPEPKDYARVMLEVAERPDHELLQTMLLRSMKQAIYDPDNRGHFGLALPAYAHFTSPIRRYPDLSLHRAIKYLLAKERGEGKSQTGAWHYDMQSMLQLGEHTSMTERRADEATRDVADWLKCDFMQDQVGNVFTGLITSVTGFGFFVRLNDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESSSNVYRLGDEVEIRVEAVHMDERTIDFALISTTRRARNEGKTARTRAKAGEKGDKRRDGKKGDPRRDKNFEPDSAFRKKKKDDGPKAPKGKKSARTKKIEANIKAKRAKKKAEK

Flanking regions ( +/- flanking 50bp)

AATTGTTACTGACGGACGAATAACGCCGGTCAGAAACCACGGAGGATACAATGTCAGTGGAAAAACAATCAAACGACCCTTATCGTGAGCGCGAAGCGGAAAAATATGATTCCCCGATCGCGAGCCGTGAATTTATTCTTGAAACTGTCCGCCGCCACACCAAACCGGTGAGCCGCGAAGATATCGCACAGGAACTGGGGATCACCGGTGAAGAGGCTCAGGAAGCCCTGCGCCGCCGTCTGCGCGCCATGGAGCGTGACGGGCAGCTGGTCTTTACCCGCCGTCAGTGCTACGCACTGCCGGAGCGTCTTGATTTAATTAAAGGAACTGTGATCGGCCATCGTGATGGCTTCGGGTTCCTGCGTGTCGAAGGACAAAAAGACGATCTCTATATCCCGCAGGATCAGATGAAATTATGCATCCACGGGGATGTGATCCTGGCCCAGGTCATGGGGGCTGATCGCAAAGGCCGCCGCGAAGCGCGCGTTGTACGTGTGACCGAGCCGAAAACCGGCCAGATTGTCGGCCGTTACTTTACCGAAGAAGGCATGGGATTTGTCGTGCCGGATGACAGCCGTTTGTGCTTCGATATTCTGATCCCGAAAGAGTCAATTAACGGCGCACGGATGGGGAATATCGTGGTGGCGGAACTGACCCGCCGTCCGGGCAAACGGGTGCAGGCGCTCGGTGTTATCACCGAAGTGCTGGGCGAGAAAATGGGCACCAGTATTGCGGTGGATATTGCCCTGCGCAAACATGAAATTCCGTTCACCTGGCCTGCTCAGGTGGAACGTCAGGTCGCGGATATCCGCGAGGAAGTACCGGAATCCGCCAAAAAAGGTCGTGTTGATTTACGCGATCTGCCGCTGGTCACTATCGACGGCGAAGATGCCCGTGACTTTGATGATGCGGTACACTGCGAAGCCAAACGCGGCGGCGGCTGGCGTCTGTGGGTGGCGATTGCTGACGTCAGTTATTATGTGCGTCCGCAGACGGCACTGGATGATGAAGCCCGTAGCCGGGGAACCTCGGTTTACTTCCCGTCACAGGTCGTACCGATGCTGCCGGAAGTGCTGTCGAATGGTGTCTGTTCACTGAACCCGCAGGTTGATCGCCTGTGTATGGTGTGTGAAATGACCATTTCGGCGAAAGGTAAGCTTTCCGGTTACCGTTTCTATGAAGCGGTAATGAGCTCCCACGCCCGTCTGACCTATACCAAGGTGTGGAAAATCCTCGAAGGGGATGAAGAGCTGCGCGAACACTATGCACCGCTGGTAAAACACCTGGAAGAGCTGCACAAACTCTATAAAGCACTGGCGGAAGCCCGTGACGAGCGCGGTGCGATTGCCTTTGAATCCGAAGAAGCGAAATTTATTTTCAATGCGGAAAAACGCATTGAGCGCATTGAACCGGTACTGCGCAACGATGCACACAAACTGATCGAAGAGTGCATGATCATGGCGAACGTTGCGGCGGCACGCTTTGTTGAGAAAAACAACGAACCGGCGCTGTACCGTGTGCATGATCGTCCGAAAGAGGACAGCGTCATCAATCTGCGCACCGTCTTTAATGAGCTGGGTCTGACCCTGCCGGGCGGCCTGACACCGGAGCCGAAAGATTACGCCCGTGTCATGCTGGAAGTGGCGGAGCGTCCTGACCACGAGTTGTTACAGACTATGCTGCTGCGTTCGATGAAACAGGCGATTTATGATCCGGACAACCGCGGTCACTTCGGTCTGGCGTTACCGGCGTATGCCCACTTTACCTCACCAATCCGCCGTTATCCGGATCTGAGTCTGCACCGTGCGATTAAGTACCTGCTGGCAAAAGAACGCGGCGAAGGGAAATCGCAGACCGGCGCGTGGCATTACGATATGCAGAGTATGCTCCAGCTCGGTGAGCACACTTCCATGACGGAGCGCCGTGCCGATGAAGCCACCCGTGACGTGGCAGACTGGCTGAAGTGCGACTTTATGCAGGACCAGGTGGGTAATGTCTTTACCGGGCTTATCACCAGTGTGACCGGGTTTGGTTTCTTTGTCCGTCTGAATGACCTGTTTATCGATGGTCTGGTACACGTATCAACACTTGATAACGATTACTACCGCTACGATAATGTCGGCCAGCGTCTGATTGGTGAATCCTCCTCCAATGTGTACCGCCTGGGTGATGAAGTTGAAATCCGGGTGGAAGCGGTGCATATGGATGAGCGCACCATTGATTTCGCGCTGATTTCCACCACCCGCCGTGCCCGTAATGAAGGCAAAACCGCAAGAACCCGGGCAAAAGCCGGGGAGAAAGGAGATAAGCGCCGGGACGGTAAGAAAGGGGATCCCCGCCGTGACAAAAACTTCGAGCCGGACAGTGCATTCCGTAAGAAGAAAAAAGACGACGGCCCGAAAGCCCCGAAAGGTAAAAAATCAGCCCGGACCAAAAAAATCGAGGCAAATATAAAGGCGAAACGCGCGAAGAAAAAAGCTGAGAAGTAACCGCCTTTGATTTGTATCTTCCCGTAATGAGGCGGTAACGCCTCATTACG