COG0557


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0557, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Exoribonuclease R
Function(s) descr. Transcription (K)

Occurence in the database

COG0557 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1371 FBDBKF_08485 77735 80173 1 rnr ribonuclease R Morganella morganii S1
1 group_1371 EHELCC_13040 83552 85990 -1 rnr ribonuclease R Morganella morganii S2
2 group_1371 NLDBIP_13380 83552 85990 -1 rnr ribonuclease R Morganella morganii S4
3 group_1371 LHKJJB_13175 76453 78891 1 rnr ribonuclease R Morganella morganii S3
4 group_1371 HKOGLL_11855 83552 85990 -1 rnr ribonuclease R Morganella morganii S5
5 group_1371 F4V73_RS09705 43924 46365 1 rnr ribonuclease R Morganella psychrotolerans
6 group_1371 PMI_RS16780 3699300 3701789 1 rnr ribonuclease R Proteus mirabilis HI4320