Orthogroup:group_1371


Homologs in group_1371

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08485 FBDBKF_08485 Morganella morganii S1 rnr ribonuclease R
EHELCC_13040 EHELCC_13040 Morganella morganii S2 rnr ribonuclease R
NLDBIP_13380 NLDBIP_13380 Morganella morganii S4 rnr ribonuclease R
LHKJJB_13175 LHKJJB_13175 Morganella morganii S3 rnr ribonuclease R
HKOGLL_11855 HKOGLL_11855 Morganella morganii S5 rnr ribonuclease R
F4V73_RS09705 F4V73_RS09705 Morganella psychrotolerans rnr ribonuclease R
PMI_RS16780 PMI_RS16780 Proteus mirabilis HI4320 rnr ribonuclease R

Distribution of group_1371 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1371 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1371

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1371.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rnr 7

Product

# Product Occurence
1 ribonuclease R 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0557 7 K Transcription (K) Exoribonuclease R

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12573 7 ribonuclease R [EC:3.1.13.1] RNA degradation -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00575 7 S1 RNA binding domain
PF00773 7 RNB domain
PF08206 7 Ribonuclease B OB domain
PF08461 7 Ribonuclease R winged-helix domain
PF17876 7 Cold shock domain

Annotations of the 157 SwissProt hits

Annotation Number of occurrences
3'-5' exoribonuclease HELZ2 2
Acetazolamide conferring resistance protein zam 1
DIS3-like exonuclease 1 8
DIS3-like exonuclease 2 6
DNA-directed RNA polymerase subunit Rpo7 3
Exoribonuclease 2 93
Exoribonuclease II, mitochondrial 2
Exosome complex exonuclease DIS3 1
Exosome complex exonuclease RRP44 2
Exosome complex exonuclease RRP44 homolog A 1
Exosome complex exonuclease dis3 1
General stress protein 13 1
Inactive exonuclease DIS3L2 1
Polyribonucleotide nucleotidyltransferase 3
Probable exosome complex exonuclease RRP44 1
Protein SSD1 1
Protein YhgF 1
Protein sts5 1
Ribonuclease II, chloroplastic/mitochondrial 1
Ribonuclease R 19
Ribonuclease R (Fragment) 1
Ribonuclease R 1 1
Ribonuclease R 2 1
Small ribosomal subunit protein bS1 2
Uncharacterized ribonuclease C609.01 1
Uncharacterized ribonuclease sll1290 1
Virulence protein SSD1 1

Protein length

Min length 812
Max length 829
Mean length (sd) 814.6 (6.4)
Median length 812.0

Protein length distribution