Homologs in group_1349

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08360 FBDBKF_08360 100.0 Morganella morganii S1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
EHELCC_13165 EHELCC_13165 100.0 Morganella morganii S2 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
NLDBIP_13505 NLDBIP_13505 100.0 Morganella morganii S4 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
HKOGLL_11980 HKOGLL_11980 100.0 Morganella morganii S5 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
F4V73_RS09560 F4V73_RS09560 87.0 Morganella psychrotolerans yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
PMI_RS16610 PMI_RS16610 60.5 Proteus mirabilis HI4320 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB

Distribution of the homologs in the orthogroup group_1349

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1349

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADP1 1.28e-94 280 56 0 238 3 yigB Flavin mononucleotide phosphatase YigB Shigella flexneri
P0ADP0 1.28e-94 280 56 0 238 1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB Escherichia coli (strain K12)
Q9CPT3 4.84e-13 69 27 11 249 1 Nanp N-acylneuraminate-9-phosphatase Mus musculus
Q5M969 1.15e-12 68 28 9 221 1 Nanp N-acylneuraminate-9-phosphatase Rattus norvegicus
Q8TBE9 7.51e-12 66 24 5 217 1 NANP N-acylneuraminate-9-phosphatase Homo sapiens
P94512 2.79e-10 62 31 3 139 1 serB Phosphoserine phosphatase Bacillus subtilis (strain 168)
O59346 5.39e-08 55 23 6 241 1 PH1655 Glyceraldehyde 3-phosphate phosphatase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O06480 4.22e-07 52 28 4 125 1 yfnB Putative HAD-hydrolase YfnB Bacillus subtilis (strain 168)
P0A8Y1 1.04e-06 51 29 4 123 1 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli (strain K12)
P0A8Y2 1.04e-06 51 29 4 123 3 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli O157:H7
Q72H00 1.05e-06 51 34 3 97 1 TT_C1695 Phosphoserine phosphatase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q9V1B3 1.26e-05 48 21 6 241 3 PYRAB05140 Glyceraldehyde 3-phosphate phosphatase Pyrococcus abyssi (strain GE5 / Orsay)
F8D9F4 1.46e-05 48 25 7 209 1 Halxa_2271 Ribulose-1,5-bisphosphate 5-phosphatase Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6)
Q8U040 1.99e-05 47 21 6 241 3 PF1777 Glyceraldehyde 3-phosphate phosphatase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q5F7W4 5.82e-05 46 26 9 250 3 NGO1052 Phosphoglycolate phosphatase Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Q7T012 0.00014 45 29 2 104 2 hdhd3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 Danio rerio
P24070 0.000236 44 27 4 118 3 None (S)-2-haloacid dehalogenase 2 Pseudomonas sp. (strain CBS-3)
Q5HZL9 0.000472 43 25 3 128 2 hdhd3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 Xenopus laevis

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_13050
Feature type CDS
Gene yigB
Product 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
Location 45438 - 46154 (strand: 1)
Length 717 (nucleotides) / 238 (amino acids)

Contig

Accession ZDB_370
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1349
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00702 haloacid dehalogenase-like hydrolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1011 Coenzyme transport and metabolism (H) H FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20862 FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MRFYRPLSPVRAMTFDLDDTLYDNRPVMDKTEEEVIAFIRQYDPRFSELPADYINVFRDRIRRQQPEIFHDVSRWRLLSWRTFFLHYGYTAARAQAGADAVMAHFAQWRSRIDVPQSTHDTLTALAAKIPLVAITNGNMEPEKCGLADYFTFILKAGPDGRAKPFCDMYRTAAQRLALPAENILHVGDNLNTDVEGALCSGMQACWINLDGRDVYHDPETRLLPHIEITQLDSLTGLL

Flanking regions ( +/- flanking 50bp)

GCCAATGTGTATGATGTTGCACATCCGCGGGCCAAACGAGGAAAACCGTAATGCGTTTTTACCGCCCCCTTTCACCTGTCCGCGCCATGACGTTCGATCTTGACGACACGCTGTATGATAATCGTCCGGTGATGGATAAAACCGAGGAGGAGGTCATTGCGTTTATCCGTCAGTATGATCCGCGTTTCAGTGAATTACCGGCTGACTATATTAATGTGTTCCGTGACCGGATCCGCCGTCAGCAGCCGGAGATTTTCCATGATGTCAGCCGCTGGCGTCTGCTTTCCTGGCGCACCTTTTTCCTGCATTACGGCTATACCGCCGCCCGTGCTCAGGCCGGGGCGGATGCGGTGATGGCGCATTTTGCGCAGTGGCGCAGCCGTATTGATGTGCCGCAGTCCACGCATGACACGCTGACTGCGCTGGCGGCCAAAATTCCGCTGGTGGCGATCACCAACGGCAATATGGAGCCGGAAAAATGCGGGCTGGCAGATTATTTTACTTTTATTCTTAAAGCCGGTCCTGACGGGCGCGCAAAACCGTTCTGCGATATGTACCGCACGGCGGCGCAGCGGCTGGCTCTCCCGGCAGAAAATATCCTGCATGTCGGTGATAACCTGAATACCGATGTGGAAGGTGCGCTGTGCAGCGGCATGCAGGCCTGCTGGATCAACCTTGACGGCCGTGATGTTTATCACGACCCGGAAACCCGCCTGCTGCCGCATATTGAAATTACACAGTTGGATTCTTTAACCGGACTGTTATAATTTTATCTGTATAAAAAACCAGTTCTTCCGGATCCGGCTGTCCGGAAGCC