Homologs in group_1349

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08360 FBDBKF_08360 87.0 Morganella morganii S1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
EHELCC_13165 EHELCC_13165 87.0 Morganella morganii S2 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
NLDBIP_13505 NLDBIP_13505 87.0 Morganella morganii S4 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
LHKJJB_13050 LHKJJB_13050 87.0 Morganella morganii S3 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
HKOGLL_11980 HKOGLL_11980 87.0 Morganella morganii S5 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
PMI_RS16610 PMI_RS16610 58.4 Proteus mirabilis HI4320 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB

Distribution of the homologs in the orthogroup group_1349

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1349

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADP1 4.87e-90 268 55 0 238 3 yigB Flavin mononucleotide phosphatase YigB Shigella flexneri
P0ADP0 4.87e-90 268 55 0 238 1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB Escherichia coli (strain K12)
P94512 9.26e-12 66 26 11 267 1 serB Phosphoserine phosphatase Bacillus subtilis (strain 168)
O59346 1.87e-10 62 27 7 236 1 PH1655 Glyceraldehyde 3-phosphate phosphatase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8TBE9 1.1e-09 60 26 10 220 1 NANP N-acylneuraminate-9-phosphatase Homo sapiens
Q9CPT3 6.35e-09 58 25 9 224 1 Nanp N-acylneuraminate-9-phosphatase Mus musculus
Q5M969 1.54e-08 57 25 9 223 1 Nanp N-acylneuraminate-9-phosphatase Rattus norvegicus
Q8U040 3.74e-08 55 24 8 239 3 PF1777 Glyceraldehyde 3-phosphate phosphatase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O06480 2.68e-06 50 23 9 238 1 yfnB Putative HAD-hydrolase YfnB Bacillus subtilis (strain 168)
Q9V1B3 2.84e-06 50 24 9 239 3 PYRAB05140 Glyceraldehyde 3-phosphate phosphatase Pyrococcus abyssi (strain GE5 / Orsay)
Q8TWR2 3.16e-06 50 33 2 96 3 MK0970 Glyceraldehyde 3-phosphate phosphatase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
F8D9F4 3.42e-06 50 25 5 207 1 Halxa_2271 Ribulose-1,5-bisphosphate 5-phosphatase Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6)
P0A8Y1 7.13e-06 48 30 2 89 1 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli (strain K12)
P0A8Y2 7.13e-06 48 30 2 89 3 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli O157:H7
P24070 9.94e-06 48 29 4 121 3 None (S)-2-haloacid dehalogenase 2 Pseudomonas sp. (strain CBS-3)
Q72H00 1.05e-05 48 33 3 98 1 TT_C1695 Phosphoserine phosphatase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q53464 2.78e-05 47 26 7 234 1 None (S)-2-haloacid dehalogenase Pseudomonas sp. (strain YL)
Q5F7W4 0.000189 45 28 12 243 3 NGO1052 Phosphoglycolate phosphatase Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
O26311 0.000194 45 22 7 231 3 MTH_209 Glyceraldehyde 3-phosphate phosphatase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P60527 0.00033 44 23 7 234 1 None (S)-2-haloacid dehalogenase Agrobacterium tumefaciens (strain RS5)
Q9JTP5 0.000544 43 28 12 243 3 gph Phosphoglycolate phosphatase Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q5HZL9 0.000601 43 31 1 82 2 hdhd3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 Xenopus laevis
Q9CYW4 0.000614 43 33 1 80 1 Hdhd3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09560
Feature type CDS
Gene yigB
Product 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
Location 11432 - 12148 (strand: 1)
Length 717 (nucleotides) / 238 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1349
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00702 haloacid dehalogenase-like hydrolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1011 Coenzyme transport and metabolism (H) H FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20862 FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MRFYRPLLPVRAMTFDLDDTLYDNRPVMDKTEEAVTAFIRQYDPRFSELPADYITVFRNRVRRQHPDIYHDVSRWRMLSWRSFFLHYGYTAALAQTGTDAVMDHFAQWRSRIDVPQSTHDTLALLAEKIPLAAITNGNMEPEKCGLADYFTFVLRAGADGRSKPFCDMYQTAAQRLMLPPANILHVGDNLNTDVEGALRSGMQTCWINLDGRDVYHDAETRLLPHIEITQLDSLVGLL

Flanking regions ( +/- flanking 50bp)

GCCAATGTGTATGATGTTGCACATCCGCGCGCCAAACGAGGAAAACCCTGATGCGTTTTTACCGTCCCCTTTTACCTGTCCGCGCCATGACCTTTGATCTTGACGATACGCTGTATGATAATCGTCCGGTGATGGATAAAACCGAAGAGGCAGTAACTGCGTTTATCCGTCAGTATGACCCGCGTTTCAGTGAGTTACCTGCGGATTATATTACTGTCTTCCGTAACCGGGTGCGTCGGCAGCATCCGGATATTTATCATGATGTCAGCCGCTGGCGTATGCTTTCCTGGCGCTCCTTTTTTCTGCATTACGGCTATACCGCAGCACTGGCACAGACCGGTACGGATGCTGTTATGGATCATTTTGCACAGTGGCGCAGCCGTATTGATGTGCCGCAATCCACCCATGACACTCTCGCGTTGCTGGCTGAAAAAATCCCGCTGGCGGCGATCACCAACGGCAACATGGAGCCGGAAAAATGCGGACTGGCAGATTATTTCACCTTTGTCCTCAGAGCCGGTGCTGACGGACGCTCAAAGCCTTTCTGTGATATGTATCAGACCGCTGCTCAGCGCCTGATGCTGCCACCCGCCAACATACTGCATGTCGGCGATAATCTGAATACGGATGTGGAAGGCGCACTGCGCAGCGGAATGCAGACCTGCTGGATAAATCTTGACGGGCGCGATGTCTATCATGATGCCGAAACCCGCCTTTTGCCGCATATTGAAATTACACAGTTGGATTCTTTAGTCGGACTGTTATAATTTTATCTGTATAAAAAAACAGTCCTCCCCGGCATAAAACGGCCGGGGAG