Orthogroup:group_1405


Homologs in group_1405

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08675 FBDBKF_08675 Morganella morganii S1 rbfA 30S ribosome-binding factor RbfA
EHELCC_12850 EHELCC_12850 Morganella morganii S2 rbfA 30S ribosome-binding factor RbfA
NLDBIP_13190 NLDBIP_13190 Morganella morganii S4 rbfA 30S ribosome-binding factor RbfA
LHKJJB_13365 LHKJJB_13365 Morganella morganii S3 rbfA 30S ribosome-binding factor RbfA
HKOGLL_11665 HKOGLL_11665 Morganella morganii S5 rbfA 30S ribosome-binding factor RbfA
F4V73_RS09900 F4V73_RS09900 Morganella psychrotolerans rbfA 30S ribosome-binding factor RbfA
PMI_RS17030 PMI_RS17030 Proteus mirabilis HI4320 rbfA 30S ribosome-binding factor RbfA

Distribution of group_1405 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1405 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1405

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1405.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rbfA 7

Product

# Product Occurence
1 30S ribosome-binding factor RbfA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0858 7 J Translation, ribosomal structure and biogenesis (J) Ribosome-binding factor RbfA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02834 7 ribosome-binding factor A - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02033 7 Ribosome-binding factor A

Annotations of the 518 SwissProt hits

Annotation Number of occurrences
30S ribosome-binding factor 1
Ribosome-binding factor A 516
Ribosome-binding factor A (Fragment) 1

Protein length

Min length 133
Max length 136
Mean length (sd) 135.6 (1.1)
Median length 136.0

Protein length distribution