Homologs in group_1349

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08360 FBDBKF_08360 60.5 Morganella morganii S1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
EHELCC_13165 EHELCC_13165 60.5 Morganella morganii S2 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
NLDBIP_13505 NLDBIP_13505 60.5 Morganella morganii S4 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
LHKJJB_13050 LHKJJB_13050 60.5 Morganella morganii S3 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
HKOGLL_11980 HKOGLL_11980 60.5 Morganella morganii S5 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
F4V73_RS09560 F4V73_RS09560 58.4 Morganella psychrotolerans yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB

Distribution of the homologs in the orthogroup group_1349

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1349

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADP1 3.48e-85 256 51 0 238 3 yigB Flavin mononucleotide phosphatase YigB Shigella flexneri
P0ADP0 3.48e-85 256 51 0 238 1 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB Escherichia coli (strain K12)
Q9CPT3 2.21e-14 73 26 12 252 1 Nanp N-acylneuraminate-9-phosphatase Mus musculus
Q5M969 1.1e-13 71 26 11 252 1 Nanp N-acylneuraminate-9-phosphatase Rattus norvegicus
Q8TBE9 1.87e-12 68 25 9 221 1 NANP N-acylneuraminate-9-phosphatase Homo sapiens
P94512 1.08e-11 66 28 4 188 1 serB Phosphoserine phosphatase Bacillus subtilis (strain 168)
Q9V1B3 5.33e-10 61 27 11 255 3 PYRAB05140 Glyceraldehyde 3-phosphate phosphatase Pyrococcus abyssi (strain GE5 / Orsay)
Q8U040 1.28e-09 60 26 11 256 3 PF1777 Glyceraldehyde 3-phosphate phosphatase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O59346 1.52e-09 59 26 11 255 1 PH1655 Glyceraldehyde 3-phosphate phosphatase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P24070 1.11e-06 51 29 2 96 3 None (S)-2-haloacid dehalogenase 2 Pseudomonas sp. (strain CBS-3)
P0A8Y1 4.65e-06 49 26 5 161 1 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli (strain K12)
P0A8Y2 4.65e-06 49 26 5 161 3 yjjG Pyrimidine 5'-nucleotidase YjjG Escherichia coli O157:H7
O06480 1.76e-05 48 25 3 124 1 yfnB Putative HAD-hydrolase YfnB Bacillus subtilis (strain 168)
Q5HZL9 0.000176 45 37 0 61 2 hdhd3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 Xenopus laevis
Q72H00 0.000194 45 25 4 140 1 TT_C1695 Phosphoserine phosphatase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16610
Feature type CDS
Gene yigB
Product 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
Location 3660933 - 3661649 (strand: 1)
Length 717 (nucleotides) / 238 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1349
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00702 haloacid dehalogenase-like hydrolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1011 Coenzyme transport and metabolism (H) H FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K20862 FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MHFYRTLMPIAAMTFDLDDTLYDNVPVMDKTEEETLAFIRQYDERFHHFTEHDVDAYKQPLLENNPDIFHDITQWRWLAAKNMLLDYGYSETKAQQGADEIMAHFAYWRSRINVPNNTHHVLTQLAEKIPLIAITNGNANPLSCGLGQYFTHILKAGPDGRSKPYPDMFDKAASLLKLPHQNILHVGDHLVTDVEGAVKSGLQACWINLDNRSLFTEGETRVMPHIEITELAKLVELI

Flanking regions ( +/- flanking 50bp)

GCGAAAGTCTATGATGCTGCTCATCCAAGAGCTAAGAGAGAAAAATCATAATGCACTTTTATCGCACTCTGATGCCGATTGCAGCGATGACTTTTGATTTAGACGATACGCTGTATGACAATGTTCCTGTGATGGATAAAACAGAAGAAGAGACCTTAGCGTTTATCCGTCAGTATGATGAGCGTTTTCACCATTTTACTGAACATGATGTAGATGCTTACAAACAGCCACTATTAGAAAATAATCCTGATATTTTTCACGATATCACTCAGTGGCGTTGGTTAGCGGCTAAAAATATGTTGTTAGACTATGGCTATAGTGAAACTAAAGCACAGCAAGGTGCTGATGAAATTATGGCTCATTTTGCTTATTGGCGTAGCCGTATTAATGTCCCTAATAATACCCATCACGTGTTGACACAACTGGCGGAAAAAATCCCATTAATCGCTATTACTAATGGTAATGCTAATCCATTAAGCTGTGGGTTGGGGCAATACTTTACACATATTTTAAAGGCAGGGCCTGATGGGCGCTCTAAGCCTTATCCTGATATGTTTGATAAGGCGGCTTCGTTACTTAAACTCCCTCATCAGAATATTTTGCATGTAGGCGATCATCTAGTGACGGATGTAGAAGGCGCGGTTAAAAGTGGATTACAGGCGTGTTGGATTAATTTAGATAATCGCAGTTTGTTTACCGAAGGTGAAACGCGTGTTATGCCTCATATTGAGATCACTGAATTAGCTAAACTGGTTGAATTAATTTAATCATAGACGCGCTCTGTGCAGGTCTTTATCCACTTTTCAGTGGGCATAGT