Homologs in group_50

Help

13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08880 FBDBKF_08880 67.3 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 69.0 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_07865 EHELCC_07865 69.0 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 67.3 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 69.0 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 67.3 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 69.0 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 67.3 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 69.0 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 67.3 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 40.8 Morganella psychrotolerans - tyrosine-type recombinase/integrase
F4V73_RS10095 F4V73_RS10095 54.9 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 66.9 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_50

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39347 0.0 565 67 0 394 5 intB Putative protein IntB Escherichia coli (strain K12)
P08320 2.21e-171 490 56 1 410 3 int Integrase Enterobacteria phage P4
P37317 3.42e-73 237 34 8 400 3 int Integrase Shigella phage Sf6
P37326 5.08e-73 236 34 8 404 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P32053 1.23e-71 234 34 8 404 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P76542 1.05e-69 228 35 10 404 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P06155 8.67e-07 54 30 1 105 3 int Integrase Enterobacteria phage phi80

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_19690
Feature type CDS
Gene -
Product Integrase
Location 1959 - 3236 (strand: -1)
Length 1278 (nucleotides) / 425 (amino acids)

Contig

Accession contig_43
Length 19499 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

Actions

Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)
LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALTDAKIRAAKPQEKPYKLADSGNMFLLVHPNGSRYWRLRYRFQGKEKTLALGIYPELSLSDARDKRDSARKQIAEGIDPCEQKRIKKALPDASQSFEAIAGLWHKSNKTWSESHREKTWKSLQTHVFPYIGSRDITSLKTPDLLIPVKAAEAKEIYEVAARLQQRISAIMRYAAQSGIIDYNPATDMAGALATVKRQHRPALPLSRISELLERLDTYRGQIMTRLATQLSLLIFIRSSEFRFARWPEIDFEKAMWTIPSERKPIKGVKFSHRGSKMRTEHLVPLSTQALDILRVIHTISGEHELIFTGDHNPWKPMSENTVNNALRLMGYDTKIDVCGHGFRAMACSSLIESGLWSRDAVERQMSHQERNGVRAAYIHKAEFLEERRLMLQWWADFLDANREQIISPFDYAKVNNPMDINRQN

Flanking regions ( +/- flanking 50bp)

CCCTGATTCGACAGGAATTTGTACCCTCTCGTATTCCGGAGACCCCTTTTATGGCACTTACTGACGCTAAGATTCGGGCTGCAAAACCGCAAGAAAAACCCTATAAACTTGCTGATTCCGGCAACATGTTTTTACTTGTTCATCCCAACGGCTCACGTTACTGGCGACTCCGTTACCGCTTTCAGGGAAAAGAAAAAACATTAGCTCTGGGAATTTATCCTGAATTATCCCTTTCTGACGCACGTGATAAAAGAGACAGCGCACGTAAGCAGATTGCTGAGGGTATCGACCCTTGTGAACAGAAACGGATAAAGAAAGCTTTACCAGACGCTTCACAAAGCTTTGAAGCCATTGCCGGACTTTGGCATAAAAGCAACAAAACCTGGTCAGAATCCCACAGGGAAAAAACATGGAAAAGCCTTCAAACACATGTTTTCCCTTACATTGGTTCACGGGATATTACATCACTGAAAACACCTGATTTACTTATTCCGGTTAAAGCTGCTGAAGCAAAAGAGATTTATGAAGTAGCAGCCCGTCTTCAACAGCGAATCTCCGCTATCATGCGATATGCCGCCCAGTCCGGGATCATTGATTATAATCCCGCTACCGATATGGCGGGGGCGCTGGCCACAGTTAAACGGCAGCACAGACCTGCATTGCCACTGAGTCGGATATCTGAGTTACTGGAACGTCTTGATACTTACCGGGGACAAATCATGACCAGACTGGCTACACAGCTTTCTTTGCTGATATTTATCCGCTCCAGTGAATTTCGCTTTGCCCGCTGGCCCGAGATAGATTTTGAAAAAGCCATGTGGACTATCCCTTCGGAACGGAAACCAATTAAAGGTGTAAAATTCTCTCATCGTGGCTCAAAAATGCGTACAGAGCATCTGGTGCCACTCTCTACTCAGGCGCTGGATATTCTGCGAGTGATCCACACTATCAGCGGTGAACATGAATTGATCTTCACAGGTGATCACAACCCCTGGAAACCGATGAGTGAAAATACAGTAAATAATGCATTACGACTTATGGGATACGATACGAAAATTGATGTTTGTGGTCACGGCTTCAGAGCTATGGCATGCAGTTCATTGATAGAATCAGGATTATGGTCAAGAGATGCTGTAGAACGCCAGATGAGTCACCAGGAACGTAATGGCGTACGTGCAGCTTATATTCACAAAGCGGAGTTTCTTGAAGAACGCAGGCTGATGCTGCAATGGTGGGCTGATTTTCTGGATGCTAACAGAGAACAAATTATTTCACCTTTTGATTATGCAAAAGTTAATAACCCTATGGATATCAACAGGCAGAATTAATTCATCTTGTGTATATAGATTTATATCATACAATGAGCATGATACTCCAT