Homologs in group_3652

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3 homologs were identified in 3 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05545 FBDBKF_05545 37.2 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_12385 NLDBIP_12385 37.2 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_12245 LHKJJB_12245 37.2 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain

Distribution of the homologs in the orthogroup group_3652

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3652

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q92HV3 7.19e-06 45 32 0 70 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZD50 9.61e-06 44 32 0 70 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_19670
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 62 - 391 (strand: 1)
Length 330 (nucleotides) / 109 (amino acids)

Contig

Accession contig_43
Length 19499 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3652
Orthogroup size 4
N. genomes 3

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MKMKINKKLYPIRYIENSGLTLQECVGILIRKIRIEKGLSGEELAFYVGLSQQQISRYERAESEMTLGQLQMFSEALGMSIWKFMDILRLLLDPEVYENKKSKQHLSSS

Flanking regions ( +/- flanking 50bp)

AAATAATTTAATTGTATTAAAGATAGTTATTCTATTCATAATGGTTTATAATGAAAATGAAGATAAATAAAAAATTATATCCAATAAGATATATTGAGAATTCAGGGCTGACACTGCAGGAGTGTGTCGGAATATTAATTCGTAAGATACGGATAGAAAAAGGATTGAGTGGTGAGGAATTAGCTTTTTATGTAGGACTAAGTCAACAGCAGATTTCACGTTACGAGCGGGCTGAAAGTGAAATGACACTGGGACAGTTACAGATGTTTTCAGAAGCGTTGGGAATGAGTATATGGAAATTTATGGATATATTACGGTTATTGTTAGATCCTGAAGTCTATGAAAATAAAAAAAGCAAACAACATTTATCATCATCATGAAGTAGTGTTTTTTTAATTACCAATAAATCCAGCATGTAATTAAATTACAG