Homologs in group_152

Help

9 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_03845 EHELCC_03845 100.0 Morganella morganii S2 pflA pyruvate formate lyase 1-activating protein
EHELCC_19995 EHELCC_19995 97.1 Morganella morganii S2 - hypothetical protein
NLDBIP_03845 NLDBIP_03845 100.0 Morganella morganii S4 pflA pyruvate formate lyase 1-activating protein
LHKJJB_09675 LHKJJB_09675 100.0 Morganella morganii S3 pflA pyruvate formate lyase 1-activating protein
HKOGLL_09300 HKOGLL_09300 100.0 Morganella morganii S5 pflA pyruvate formate lyase 1-activating protein
F4V73_RS01310 F4V73_RS01310 97.6 Morganella psychrotolerans pflA pyruvate formate lyase 1-activating protein
PMI_RS03465 PMI_RS03465 87.8 Proteus mirabilis HI4320 pflA pyruvate formate lyase 1-activating protein
PMI_RS12405 PMI_RS12405 31.3 Proteus mirabilis HI4320 - YjjW family glycine radical enzyme activase
PMI_RS13380 PMI_RS13380 32.6 Proteus mirabilis HI4320 cutD choline TMA-lyase-activating enzyme

Distribution of the homologs in the orthogroup group_152

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9N7 3.41e-165 459 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Shigella flexneri
P0A9N4 3.41e-165 459 86 0 246 1 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli (strain K12)
P0A9N5 3.41e-165 459 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9N6 3.41e-165 459 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O157:H7
P43751 1.35e-131 374 71 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8CTX5 6.82e-71 220 47 2 234 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HKI0 6.82e-71 220 47 2 234 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0A442 9.13e-70 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71ZR3 9.13e-70 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serotype 4b (strain F2365)
P0A443 9.13e-70 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q46267 2.33e-69 216 43 2 237 3 act Pyruvate formate-lyase-activating enzyme Clostridium pasteurianum
Q7A1W8 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MW2)
Q6GCP9 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MSSA476)
Q6GK89 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MRSA252)
Q7A7X5 2.02e-68 214 47 2 232 1 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain N315)
Q99WZ6 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF3 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain COL)
Q2YV52 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D7 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK43 2.02e-68 214 47 2 232 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain USA300)
O68575 6.7e-68 213 42 3 243 3 act Pyruvate formate-lyase-activating enzyme Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
A0A069AMK2 3.31e-31 119 27 6 290 3 pflE Trans-4-hydroxy-L-proline dehydratase activating enzyme Clostridioides difficile
E5Y377 5.57e-26 106 28 7 282 1 islB Isethionate sulfite-lyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
P32675 1.06e-25 105 26 4 271 3 pflC Pyruvate formate-lyase 2-activating enzyme Escherichia coli (strain K12)
A0A124EH39 4.43e-24 101 25 9 310 3 AUL39_03430 Indoleacetate decarboxylase activating enzyme Tractidigestivibacter scatoligenes
Q312S3 3.8e-23 98 33 3 177 2 islB Isethionate sulfite-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
A0A318FEA4 3.1e-22 96 31 3 214 3 hpfH (2S)-3-sulfopropanediol dehydratase activating enzyme Klebsiella oxytoca
O87941 9.58e-21 92 28 3 200 2 bssD Benzylsuccinate synthase activating enzyme Thauera aromatica
O87941 0.000351 44 57 0 28 2 bssD Benzylsuccinate synthase activating enzyme Thauera aromatica
Q30W71 2.78e-20 90 31 2 200 1 cutD Choline trimethylamine-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
C9YHW3 5.82e-20 90 32 6 195 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain R20291)
C9XIS7 5.82e-20 90 32 6 195 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain CD196)
Q38HX2 7.19e-20 89 29 5 191 1 csdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridium scatologenes
Q18CP3 8.72e-20 89 32 6 194 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain 630)
Q84F14 1.57e-19 89 31 6 194 1 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile
Q727N0 1.8e-19 88 30 4 192 1 iseH Isethionate sulfite-lyase activating enzyme Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P39409 8.8e-16 78 27 10 268 1 yjjW Putative glycyl-radical enzyme activating enzyme YjjW Escherichia coli (strain K12)
E5Y7I3 9.76e-15 75 31 4 195 3 hpsH (2S)-3-sulfopropanediol sulfolyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
B8J0R0 3.53e-13 71 30 3 171 1 islB Isethionate sulfite-lyase activating enzyme Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P44743 2.64e-12 68 26 7 216 3 HI_0520 Putative glycyl-radical enzyme activating enzyme HI_0520 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P75794 7.89e-12 67 30 2 171 3 ybiY Putative pyruvate formate-lyase 3-activating enzyme Escherichia coli (strain K12)
P07075 1.13e-08 56 35 1 70 3 NRDG Anaerobic ribonucleoside-triphosphate reductase-activating protein Enterobacteria phage T4
Q58624 2.45e-07 53 32 6 122 3 MJ1227 Putative glycyl-radical enzyme activating enzyme MJ1227 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9L645 1.02e-06 50 31 1 77 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z138 1.02e-06 50 31 1 77 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhi
A2BJ90 1.62e-06 51 30 1 86 3 queE 7-carboxy-7-deazaguanine synthase Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)
Q7V9H9 3.52e-06 50 21 7 198 3 queE 7-carboxy-7-deazaguanine synthase Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
P0A9N8 2.08e-05 47 28 1 75 1 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli (strain K12)
P0A9N9 2.08e-05 47 28 1 75 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli O157:H7
Q58218 2.18e-05 48 21 8 225 4 MJ0808 Uncharacterized protein MJ0808 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58214 3.72e-05 47 25 6 171 4 MJ0804 Uncharacterized protein MJ0804 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9KM76 4.44e-05 45 28 1 80 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8ZZZ0 4.8e-05 46 34 2 67 3 queE 7-carboxy-7-deazaguanine synthase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
O27295 0.000165 45 21 4 182 3 queE 7-carboxy-7-deazaguanine synthase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P73667 0.000186 44 28 3 102 3 queE 7-carboxy-7-deazaguanine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_07125
Feature type CDS
Gene pflA
Product pyruvate formate lyase 1-activating protein
Location 94259 - 94999 (strand: -1)
Length 741 (nucleotides) / 246 (amino acids)

Contig

Accession contig_7
Length 171383 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_152
Orthogroup size 10
N. genomes 7

Actions

Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1180 Posttranslational modification, protein turnover, chaperones (O) O Pyruvate-formate lyase-activating enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] - -

Protein Sequence

MSVLGRIHSFESCGTVDGPGIRFIVFFQGCLMRCLYCHNRDTWDLHDGQEVTVDELMKEAVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRECKKEGIHTCLDTNGFVRRYDPVIDELMEVTDLVMLDLKQLDDSIHQNLVGVSNHRTLQFARYLAERNQKTWVRYVVVPGWSDDEHSAHLLGDFTKDMKNIEKIELLPYHELGKHKWTAMNEEYKLDGVKPPSKETMEKVKSILESYGHKVMY

Flanking regions ( +/- flanking 50bp)

TCTGTTTCGGGGCCTTTATTATAACTGGTCAGTTTTGGAGTAATCCTGTCATGTCAGTATTAGGTCGTATTCACTCATTTGAATCCTGCGGGACCGTTGATGGCCCGGGCATTCGTTTTATCGTCTTTTTCCAGGGCTGTCTGATGCGTTGCCTGTATTGTCATAACCGCGATACATGGGATCTGCATGACGGTCAGGAAGTCACTGTGGACGAGTTAATGAAAGAAGCGGTCACATACCGCCACTTTATGAATGCATCCGGCGGCGGTGTGACAGCATCCGGTGGTGAAGCGATACTGCAGGCTGAGTTCGTGCGTGACTGGTTCCGTGAGTGTAAAAAAGAAGGTATTCACACCTGCCTGGATACCAATGGTTTTGTCCGCCGTTATGACCCGGTCATTGACGAGCTGATGGAAGTAACCGATTTGGTTATGCTGGATTTAAAACAACTCGATGACAGCATCCACCAGAATTTAGTCGGCGTATCCAATCACCGCACATTACAGTTCGCCCGTTATCTCGCTGAACGGAATCAGAAAACCTGGGTACGCTATGTTGTCGTGCCGGGCTGGTCTGATGATGAGCATTCCGCCCACCTTCTCGGTGATTTCACCAAAGATATGAAGAATATCGAGAAGATTGAACTGCTGCCTTACCACGAGTTAGGAAAGCATAAATGGACGGCAATGAATGAAGAATACAAACTTGATGGTGTTAAGCCGCCGTCAAAAGAGACCATGGAAAAAGTGAAATCCATCCTGGAAAGCTATGGTCATAAAGTGATGTATTAAGTTATCTCACTGCTATTTCTGACAGCACACCCCAGTGTGCTGTTTTTATT