Homologs in group_152

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9 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07125 FBDBKF_07125 97.6 Morganella morganii S1 pflA pyruvate formate lyase 1-activating protein
EHELCC_03845 EHELCC_03845 97.6 Morganella morganii S2 pflA pyruvate formate lyase 1-activating protein
EHELCC_19995 EHELCC_19995 94.1 Morganella morganii S2 - hypothetical protein
NLDBIP_03845 NLDBIP_03845 97.6 Morganella morganii S4 pflA pyruvate formate lyase 1-activating protein
LHKJJB_09675 LHKJJB_09675 97.6 Morganella morganii S3 pflA pyruvate formate lyase 1-activating protein
HKOGLL_09300 HKOGLL_09300 97.6 Morganella morganii S5 pflA pyruvate formate lyase 1-activating protein
PMI_RS03465 PMI_RS03465 88.2 Proteus mirabilis HI4320 pflA pyruvate formate lyase 1-activating protein
PMI_RS12405 PMI_RS12405 32.6 Proteus mirabilis HI4320 - YjjW family glycine radical enzyme activase
PMI_RS13380 PMI_RS13380 32.6 Proteus mirabilis HI4320 cutD choline TMA-lyase-activating enzyme

Distribution of the homologs in the orthogroup group_152

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9N7 5.34e-166 461 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Shigella flexneri
P0A9N4 5.34e-166 461 86 0 246 1 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli (strain K12)
P0A9N5 5.34e-166 461 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9N6 5.34e-166 461 86 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O157:H7
P43751 6.03e-133 377 72 0 246 3 pflA Pyruvate formate-lyase 1-activating enzyme Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q46267 2.58e-70 218 43 2 237 3 act Pyruvate formate-lyase-activating enzyme Clostridium pasteurianum
Q8CTX5 1.14e-69 217 47 2 234 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HKI0 1.14e-69 217 47 2 234 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0A442 1.2e-69 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71ZR3 1.2e-69 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serotype 4b (strain F2365)
P0A443 1.2e-69 217 44 1 245 3 pflA Pyruvate formate-lyase-activating enzyme Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q7A1W8 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MW2)
Q6GCP9 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MSSA476)
Q6GK89 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MRSA252)
Q7A7X5 2.36e-67 211 47 3 236 1 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain N315)
Q99WZ6 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF3 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain COL)
Q2YV52 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D7 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK43 2.36e-67 211 47 3 236 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain USA300)
O68575 1.08e-66 210 42 3 244 3 act Pyruvate formate-lyase-activating enzyme Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
A0A069AMK2 3.48e-30 117 26 6 290 3 pflE Trans-4-hydroxy-L-proline dehydratase activating enzyme Clostridioides difficile
P32675 3.8e-25 103 25 4 271 3 pflC Pyruvate formate-lyase 2-activating enzyme Escherichia coli (strain K12)
E5Y377 8.29e-25 103 27 9 282 1 islB Isethionate sulfite-lyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
A0A124EH39 5.33e-23 98 24 8 310 3 AUL39_03430 Indoleacetate decarboxylase activating enzyme Tractidigestivibacter scatoligenes
A0A318FEA4 1.17e-22 97 31 3 214 3 hpfH (2S)-3-sulfopropanediol dehydratase activating enzyme Klebsiella oxytoca
Q30W71 1.41e-22 97 27 6 300 1 cutD Choline trimethylamine-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q312S3 2.49e-22 96 32 3 177 2 islB Isethionate sulfite-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
O87941 3.49e-20 90 27 4 217 2 bssD Benzylsuccinate synthase activating enzyme Thauera aromatica
O87941 0.000229 45 60 0 28 2 bssD Benzylsuccinate synthase activating enzyme Thauera aromatica
C9YHW3 5.48e-20 90 31 6 198 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain R20291)
C9XIS7 5.48e-20 90 31 6 198 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain CD196)
Q18CP3 7.65e-20 89 30 6 197 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain 630)
Q727N0 1.26e-19 89 29 4 192 1 iseH Isethionate sulfite-lyase activating enzyme Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q84F14 1.39e-19 89 30 6 197 1 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile
Q38HX2 1.9e-19 88 29 5 191 1 csdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridium scatologenes
P39409 8.1e-17 80 27 11 268 1 yjjW Putative glycyl-radical enzyme activating enzyme YjjW Escherichia coli (strain K12)
E5Y7I3 9.58e-14 72 30 4 195 3 hpsH (2S)-3-sulfopropanediol sulfolyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
P44743 7.17e-13 69 27 7 216 3 HI_0520 Putative glycyl-radical enzyme activating enzyme HI_0520 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B8J0R0 1.62e-12 69 30 3 199 1 islB Isethionate sulfite-lyase activating enzyme Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P75794 2.05e-12 68 32 2 171 3 ybiY Putative pyruvate formate-lyase 3-activating enzyme Escherichia coli (strain K12)
P07075 8.93e-09 56 35 1 70 3 NRDG Anaerobic ribonucleoside-triphosphate reductase-activating protein Enterobacteria phage T4
Q58624 1.17e-07 54 33 6 122 3 MJ1227 Putative glycyl-radical enzyme activating enzyme MJ1227 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A2BJ90 5.81e-07 52 29 1 86 3 queE 7-carboxy-7-deazaguanine synthase Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)
Q9L645 2.04e-06 49 31 2 80 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z138 2.12e-06 49 31 2 80 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhi
Q7V9H9 5.1e-06 49 22 7 198 3 queE 7-carboxy-7-deazaguanine synthase Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
P0A9N8 5.91e-06 48 27 3 93 1 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli (strain K12)
P0A9N9 5.91e-06 48 27 3 93 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli O157:H7
Q9KM76 5.19e-05 45 30 1 71 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q58218 6.14e-05 47 21 8 225 4 MJ0808 Uncharacterized protein MJ0808 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8ZZZ0 6.8e-05 46 33 2 65 3 queE 7-carboxy-7-deazaguanine synthase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
Q58214 8.53e-05 46 26 6 168 4 MJ0804 Uncharacterized protein MJ0804 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P73667 0.000494 43 28 3 102 3 queE 7-carboxy-7-deazaguanine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O27295 0.000642 43 21 5 183 3 queE 7-carboxy-7-deazaguanine synthase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01310
Feature type CDS
Gene pflA
Product pyruvate formate lyase 1-activating protein
Location 281993 - 282733 (strand: -1)
Length 741 (nucleotides) / 246 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_152
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1180 Posttranslational modification, protein turnover, chaperones (O) O Pyruvate-formate lyase-activating enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] - -

Protein Sequence

MSVLGRIHSFESCGTVDGPGIRFIIFFQGCLMRCLYCHNRDTWDLHGGQEVTVDELMKEATTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELMEVTDLVMLDLKQLDDSIHQNLVGVSNHRTLQFARYLAERNQKTWIRYVVVPGWSDDEHSAHLLGDFTKDMKNIEKIELLPYHELGKHKWTAMNEEYKLDGVNPPSKETMEKVKSILESYGHKVMY

Flanking regions ( +/- flanking 50bp)

TCTGTTTCGGGGCCTTTATTATAACTGGTCAGTTTTGGAGTAATCCTGTCATGTCTGTACTTGGTCGAATTCACTCTTTCGAATCCTGCGGCACCGTTGATGGTCCGGGGATCCGCTTTATCATCTTCTTTCAGGGCTGTCTGATGCGCTGCCTGTATTGCCATAACCGCGATACCTGGGACTTGCATGGTGGTCAGGAAGTGACTGTTGACGAGTTAATGAAAGAAGCTACCACTTACCGTCATTTTATGAACGCTTCCGGCGGCGGCGTAACCGCATCCGGTGGTGAAGCAATATTGCAGGCTGAATTTGTGCGTGACTGGTTCCGTGCCTGTAAAAAAGAAGGGATCCATACCTGTCTGGACACCAACGGATTTGTCCGTCGTTATGACCCTGTAATCGACGAATTAATGGAAGTGACTGATCTTGTCATGCTGGATTTAAAACAACTCGATGACAGCATTCACCAGAATTTAGTCGGCGTTTCCAACCACCGCACATTACAGTTCGCCCGTTATCTGGCTGAACGTAATCAGAAAACCTGGATCCGTTACGTTGTCGTGCCGGGCTGGTCTGATGATGAACATTCCGCACATCTTCTCGGCGATTTCACCAAAGATATGAAAAATATTGAGAAGATCGAATTATTGCCTTACCACGAATTAGGTAAGCATAAGTGGACAGCAATGAATGAAGAATACAAACTTGATGGTGTAAACCCGCCGTCAAAAGAGACCATGGAAAAAGTAAAATCTATCCTCGAAAGCTATGGTCACAAAGTAATGTATTAAGTTCTTAATCTTTTTTAACAGCACACTCCGGTGTGCTGTTTTTGTTTGTG