Orthogroup:group_142


Homologs in group_142

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07125 FBDBKF_07125 Morganella morganii S1 pflA pyruvate formate lyase 1-activating protein
EHELCC_03845 EHELCC_03845 Morganella morganii S2 pflA pyruvate formate lyase 1-activating protein
EHELCC_19995 EHELCC_19995 Morganella morganii S2 - hypothetical protein
NLDBIP_03845 NLDBIP_03845 Morganella morganii S4 pflA pyruvate formate lyase 1-activating protein
LHKJJB_09675 LHKJJB_09675 Morganella morganii S3 pflA pyruvate formate lyase 1-activating protein
HKOGLL_09300 HKOGLL_09300 Morganella morganii S5 pflA pyruvate formate lyase 1-activating protein
F4V73_RS01310 F4V73_RS01310 Morganella psychrotolerans pflA pyruvate formate lyase 1-activating protein
PMI_RS03465 PMI_RS03465 Proteus mirabilis HI4320 pflA pyruvate formate lyase 1-activating protein
PMI_RS12405 PMI_RS12405 Proteus mirabilis HI4320 - YjjW family glycine radical enzyme activase
PMI_RS13380 PMI_RS13380 Proteus mirabilis HI4320 cutD choline TMA-lyase-activating enzyme

Distribution of group_142 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_142 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_142

Orthogroup content: 10 members

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This page summarizes the annotation of all members of the orthologous group group_142.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pflA 7
2 - 2
3 cutD 1

Product

# Product Occurence
1 pyruvate formate lyase 1-activating protein 7
2 hypothetical protein 1
3 YjjW family glycine radical enzyme activase 1
4 choline TMA-lyase-activating enzyme 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1180 10 O Posttranslational modification, protein turnover, chaperones (O) Pyruvate-formate lyase-activating enzyme

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K04069 8 pyruvate formate lyase activating enzyme [EC:1.97.1.4] - -
K20037 1 choline trimethylamine-lyase activating enzyme [EC:1.97.1.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04055 9 Radical SAM superfamily
PF12838 1 4Fe-4S dicluster domain
PF13237 1 4Fe-4S dicluster domain
PF13353 8 4Fe-4S single cluster domain

Annotations of the 258 SwissProt hits

Annotation Number of occurrences
(2S)-3-sulfopropanediol dehydratase activating enzyme 1
(2S)-3-sulfopropanediol sulfolyase activating enzyme 1
4-hydroxyphenylacetate decarboxylase activating enzyme 5
7-carboxy-7-deazaguanine synthase 5
Acetyl-CoA decarbonylase/synthase complex subunit alpha 1 2
Anaerobic ribonucleoside-triphosphate reductase-activating protein 6
Benzylsuccinate synthase activating enzyme 1
Choline trimethylamine-lyase activating enzyme 1
Coenzyme F420 hydrogenase subunit gamma 1
Dual-specificity RNA methyltransferase RlmN 24
Dual-specificity RNA methyltransferase RlmN 2 1
Ferredoxin-1 1
Ferredoxin-2 1
Indoleacetate decarboxylase activating enzyme 1
Isethionate sulfite-lyase activating enzyme 4
NADH-quinone oxidoreductase subunit I 1
Photosystem I iron-sulfur center 163
Probable dual-specificity RNA methyltransferase RlmN 5
Probable ferredoxin 1
Probable ferredoxin TA0517 1
Putative electron transport protein YccM 1
Putative glycyl-radical enzyme activating enzyme HI_0520 1
Putative glycyl-radical enzyme activating enzyme MJ1227 1
Putative glycyl-radical enzyme activating enzyme MJ1632 1
Putative glycyl-radical enzyme activating enzyme YjjW 1
Putative pyruvate formate-lyase 3-activating enzyme 1
Pyruvate formate-lyase 1-activating enzyme 5
Pyruvate formate-lyase 2-activating enzyme 1
Pyruvate formate-lyase-activating enzyme 16
Trans-4-hydroxy-L-proline dehydratase activating enzyme 1
Uncharacterized polyferredoxin-like protein MJ0514.1 1
Uncharacterized protein MJ0804 1
Uncharacterized protein MJ0808 1

Protein length

Min length 34
Max length 316
Mean length (sd) 236.0 (75.0)
Median length 246.0

Protein length distribution