Homologs in group_304

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08065 FBDBKF_08065 33.9 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_13895 EHELCC_13895 33.9 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_14340 NLDBIP_14340 33.9 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_08510 LHKJJB_08510 33.9 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_08060 HKOGLL_08060 33.9 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS12930 F4V73_RS12930 32.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS14650 PMI_RS14650 32.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_304

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_304

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 4.72e-72 224 46 0 251 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
Q8FQS2 2.86e-09 60 30 0 103 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NRR3 1.04e-08 58 30 0 103 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q6NI56 1.11e-06 52 29 0 96 3 ripA HTH-type transcriptional regulator RipA Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q8FCI6 4.32e-06 50 26 5 179 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9EYV5 1.26e-05 48 25 5 179 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O127:H6 (strain E2348/69 / EPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12515
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 94575 - 95351 (strand: -1)
Length 777 (nucleotides) / 258 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_304
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02311 AraC-like ligand binding domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25495 AraC family transcriptional regulator, regulator of nimT - -

Protein Sequence

MSLSNSLKNFDLDSNTNPIVAMKVQQGARDEELPLHIHRKGQLILTLHGGVTSLSPNAYWMVPANCAVWIPAGQPHSNRVTTNAEVLFLYVEPNVPGMPQECCTLQISPMLREMMKHLESCPQDYTCDSHIARFAHVMLHELTMMPVVRLSLPISDNVKVRMLADSLMNHPWDRSSLDIWAGRLAMSKRTFERFILRETGMTFGRWRQQLQLLVAIRLLVTGTSVQNTAFELGYDSVTAFITMFKKILGTTPGRYLEQ

Flanking regions ( +/- flanking 50bp)

TTTGCCAAATTATCCGGGCGAAACTCAGATGAACAGAGGGAGTCACCCGCATGTCATTATCTAACTCGTTGAAAAATTTTGATCTTGATTCCAATACGAATCCGATTGTTGCCATGAAGGTTCAGCAGGGGGCGCGTGATGAAGAGCTTCCGCTCCATATACACAGAAAAGGGCAGCTGATATTGACGTTGCATGGCGGGGTCACCAGCCTTTCACCCAATGCCTATTGGATGGTGCCGGCAAACTGTGCGGTCTGGATCCCGGCGGGGCAGCCCCACAGCAACAGAGTGACAACTAATGCGGAGGTTCTGTTTTTATATGTGGAACCGAATGTTCCGGGTATGCCGCAGGAGTGTTGTACATTACAAATAAGCCCGATGCTGCGTGAAATGATGAAACACCTGGAGAGCTGTCCACAGGATTACACCTGCGACAGTCATATCGCGAGATTTGCTCACGTTATGCTTCACGAACTTACCATGATGCCGGTTGTACGGCTGAGCCTGCCAATCAGTGATAATGTAAAAGTAAGAATGCTGGCAGATAGTCTGATGAACCATCCGTGGGACAGAAGCTCGCTTGATATCTGGGCGGGAAGGCTGGCAATGAGTAAACGCACATTTGAGCGATTTATCCTGAGAGAAACAGGAATGACGTTTGGACGCTGGAGACAACAGCTTCAGTTGTTGGTAGCGATTCGGCTGCTTGTCACCGGGACCTCGGTTCAGAATACCGCCTTTGAGCTGGGTTATGATTCAGTCACGGCATTTATCACCATGTTCAAAAAAATATTGGGAACAACCCCGGGGCGCTATCTCGAACAGTAATGCCTTGATATTTATATGCTATATATACTTCCCCCGGTTTTATCCAGGCA